miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 105857 0.69 0.692704
Target:  5'- cGCAGu-GCCGcuccucGCAGuGGGCcCUGGGAc -3'
miRNA:   3'- aCGUCuuUGGC------CGUCuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 106929 0.66 0.871651
Target:  5'- aGCAGAAccucaGCCGGCuGAGuGuGCUuucugGAGAg -3'
miRNA:   3'- aCGUCUU-----UGGCCGuCUC-C-CGGa----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 108750 0.67 0.83675
Target:  5'- gUGCAgccaguuuuucccuGAGGCUGGCAgaaaucuGAGGGCCauagaaaUGAGGa -3'
miRNA:   3'- -ACGU--------------CUUUGGCCGU-------CUCCCGG-------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 108872 0.67 0.798127
Target:  5'- gGCuGGAAugCGGCAGA-GGCC-GAGc -3'
miRNA:   3'- aCG-UCUUugGCCGUCUcCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 109668 0.68 0.779952
Target:  5'- aGCAGAAGCCGacguacaagaGCAGAGgcaGGCagGAGAa -3'
miRNA:   3'- aCGUCUUUGGC----------CGUCUC---CCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 112515 0.87 0.067617
Target:  5'- -cCAGggGCCGGUGGAGGGCCUGGGu -3'
miRNA:   3'- acGUCuuUGGCCGUCUCCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 112758 0.75 0.393521
Target:  5'- cGCAGAAGCCGGCc-AGGGCauguaaaaaUGAGGc -3'
miRNA:   3'- aCGUCUUUGGCCGucUCCCGg--------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 114305 0.69 0.732372
Target:  5'- gGCgaGGAGACCGGCGGcGGGCUcGGc- -3'
miRNA:   3'- aCG--UCUUUGGCCGUCuCCCGGaCUcu -5'
29103 5' -57.2 NC_006146.1 + 115156 0.7 0.672535
Target:  5'- uUGUuGAAAaacgcCCGGCAGGGacuguaaaGGCCUGGGAc -3'
miRNA:   3'- -ACGuCUUU-----GGCCGUCUC--------CCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 115188 0.68 0.751726
Target:  5'- cGCGGAGGCCaGCGGcGGGCa-GAGc -3'
miRNA:   3'- aCGUCUUUGGcCGUCuCCCGgaCUCu -5'
29103 5' -57.2 NC_006146.1 + 115405 0.68 0.78911
Target:  5'- gUGCAGGAggcaGCUGGCGGccGGGCCUc--- -3'
miRNA:   3'- -ACGUCUU----UGGCCGUCu-CCCGGAcucu -5'
29103 5' -57.2 NC_006146.1 + 116359 0.66 0.840823
Target:  5'- gGCGGAGAUCGGagaucucaaGGAGGucCCUGAGc -3'
miRNA:   3'- aCGUCUUUGGCCg--------UCUCCc-GGACUCu -5'
29103 5' -57.2 NC_006146.1 + 116580 0.66 0.864249
Target:  5'- aGCAcGA---CGGCGGAaGGCCUGAGc -3'
miRNA:   3'- aCGU-CUuugGCCGUCUcCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 117895 0.66 0.848829
Target:  5'- cGCGuGAGGCCcagGGCcagaAGAGGGgCCUcGAGAc -3'
miRNA:   3'- aCGU-CUUUGG---CCG----UCUCCC-GGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 119823 0.73 0.492451
Target:  5'- gGCGGggGaCCGGcCAGAGGaCCUGgAGAu -3'
miRNA:   3'- aCGUCuuU-GGCC-GUCUCCcGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 119950 0.66 0.840823
Target:  5'- cUGcCGGAGGucUCGGUGGGGGGUCagGAGAc -3'
miRNA:   3'- -AC-GUCUUU--GGCCGUCUCCCGGa-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 121138 0.66 0.864249
Target:  5'- -aCAucAGCCGGCGucuGGGCCUGGGc -3'
miRNA:   3'- acGUcuUUGGCCGUcu-CCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 123695 0.69 0.722562
Target:  5'- gGCGGAGG-CGGCcaGGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCGucUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 124498 0.7 0.676581
Target:  5'- cGCGGGAcucggccuggucucgGCCcuGGCGagggacGGGGGCCUGGGGg -3'
miRNA:   3'- aCGUCUU---------------UGG--CCGU------CUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 124993 0.66 0.871651
Target:  5'- gGCAcGGucACCGGCc--GGGCgCUGAGAa -3'
miRNA:   3'- aCGU-CUu-UGGCCGucuCCCG-GACUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.