miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 170492 0.71 0.581092
Target:  5'- aGCGGGgggcuuccccgGACCcccagcgcgcGGCGGgcGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCU-----------UUGG----------CCGUC--UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170435 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 170384 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 170359 0.66 0.848829
Target:  5'- gUGUGGAGGCCcGCGGAGaGGCCg---- -3'
miRNA:   3'- -ACGUCUUUGGcCGUCUC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 170212 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 170161 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170093 0.73 0.491499
Target:  5'- gGCGGGAgggGCCGGCgccgcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG-------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169585 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 169504 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 169453 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169428 0.66 0.848829
Target:  5'- gUGUGGAGGCCcGCGGAGaGGCCg---- -3'
miRNA:   3'- -ACGUCUUUGGcCGUCUC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 169281 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 169230 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 169161 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168629 0.67 0.801693
Target:  5'- aGCGGggGgcuuccCCGGggcccgagcgcgcguCGGuGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCuuU------GGCC---------------GUC-UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168572 0.66 0.871651
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGaCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 168521 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168496 0.66 0.848829
Target:  5'- gUGUGGAGGCCcGCGGAGaGGCCg---- -3'
miRNA:   3'- -ACGUCUUUGGcCGUCUC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 168474 0.74 0.422737
Target:  5'- cGCAGAu-CCGGCcucacguccacggucGGGGGGCCgGGGAc -3'
miRNA:   3'- aCGUCUuuGGCCG---------------UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 168349 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.