miRNA display CGI


Results 21 - 40 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 168298 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168229 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167758 0.74 0.445031
Target:  5'- cGCAGggGCCGGguGGGcgcgcauGGCUcGAGAc -3'
miRNA:   3'- aCGUCuuUGGCCguCUC-------CCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 167720 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 167640 0.72 0.511679
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 167589 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167564 0.66 0.848829
Target:  5'- gUGUGGAGGCCcGCGGAGaGGCCg---- -3'
miRNA:   3'- -ACGUCUUUGGcCGUCUC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 167417 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 167366 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 167297 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 163802 0.66 0.871651
Target:  5'- aGCGGAcauuGGCUGGCguugccagGGAGGGUg-GAGAa -3'
miRNA:   3'- aCGUCU----UUGGCCG--------UCUCCCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 161770 0.67 0.83263
Target:  5'- aGgGGgcGCCugGGCGG-GGGCCUGAa- -3'
miRNA:   3'- aCgUCuuUGG--CCGUCuCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 160969 0.66 0.871651
Target:  5'- uUGCAGAAucACCaggcauuGCAGAGugaGGCCUGAc- -3'
miRNA:   3'- -ACGUCUU--UGGc------CGUCUC---CCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 159981 0.73 0.473564
Target:  5'- cGCAGGAGCCcGCAGuuGGGGUCUGGc- -3'
miRNA:   3'- aCGUCUUUGGcCGUC--UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 158545 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 158421 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 157733 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 157598 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 157095 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 156836 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.