miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 156023 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 155466 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 155342 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 154656 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 154520 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 154017 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 153758 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 152945 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 152388 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 152264 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 151623 0.67 0.83263
Target:  5'- cGCuccaccGAGAcCCGGCAGGGGGUCUu--- -3'
miRNA:   3'- aCGu-----CUUU-GGCCGUCUCCCGGAcucu -5'
29103 5' -57.2 NC_006146.1 + 151578 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 151442 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 151170 0.7 0.672535
Target:  5'- aGCAGGAugCGGCGGuAGcGGCCg---- -3'
miRNA:   3'- aCGUCUUugGCCGUC-UC-CCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 150939 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 150681 0.68 0.761251
Target:  5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 150451 0.72 0.560987
Target:  5'- uUGUAGAAGCCGGaCAG-GGGCUgGAuGAc -3'
miRNA:   3'- -ACGUCUUUGGCC-GUCuCCCGGaCU-CU- -5'
29103 5' -57.2 NC_006146.1 + 149867 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 149310 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 149186 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.