miRNA display CGI


Results 61 - 80 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 148500 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 148364 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 147861 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 147712 0.69 0.732372
Target:  5'- gGCcaGGAAGgCGGC--GGGGCCUGGGu -3'
miRNA:   3'- aCG--UCUUUgGCCGucUCCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 147603 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 146789 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 146232 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 146108 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 145422 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 145286 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 144783 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 144525 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 143711 0.67 0.798127
Target:  5'- aGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 143154 0.74 0.401977
Target:  5'- gGaCGGGGAC--GCGGAGGGCCUGAGGc -3'
miRNA:   3'- aC-GUCUUUGgcCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 143030 0.73 0.482963
Target:  5'- aUGgGGAAGCCGGagucCAGAGGGgCCcGAGGg -3'
miRNA:   3'- -ACgUCUUUGGCC----GUCUCCC-GGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 142344 0.74 0.410549
Target:  5'- gGCAG--GCCgGGCAGGccgggucuuGGGCCUGGGAg -3'
miRNA:   3'- aCGUCuuUGG-CCGUCU---------CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 142208 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 141447 0.68 0.770663
Target:  5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 139390 0.66 0.844049
Target:  5'- aGUAGGAgaaggcccccacggcGCCGGgGGAGGuGCCUgcuguuuaguagGAGAa -3'
miRNA:   3'- aCGUCUU---------------UGGCCgUCUCC-CGGA------------CUCU- -5'
29103 5' -57.2 NC_006146.1 + 139361 0.66 0.864249
Target:  5'- gGCGGc-GCCGGgGGGGGuGCCUGc-- -3'
miRNA:   3'- aCGUCuuUGGCCgUCUCC-CGGACucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.