miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 129101 1.09 0.002195
Target:  5'- gUGCAGAAACCGGCAGAGGGCCUGAGAg -3'
miRNA:   3'- -ACGUCUUUGGCCGUCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170492 0.71 0.581092
Target:  5'- aGCGGGgggcuuccccgGACCcccagcgcgcGGCGGgcGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCU-----------UUGG----------CCGUC--UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168298 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 70209 0.66 0.878841
Target:  5'- cGCAGc-GCCGGguGccgAGGGCCgcGAGc -3'
miRNA:   3'- aCGUCuuUGGCCguC---UCCCGGa-CUCu -5'
29103 5' -57.2 NC_006146.1 + 159981 0.73 0.473564
Target:  5'- cGCAGGAGCCcGCAGuuGGGGUCUGGc- -3'
miRNA:   3'- aCGUCUUUGGcCGUC--UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 170093 0.73 0.491499
Target:  5'- gGCGGGAgggGCCGGCgccgcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG-------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167297 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168229 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 150451 0.72 0.560987
Target:  5'- uUGUAGAAGCCGGaCAG-GGGCUgGAuGAc -3'
miRNA:   3'- -ACGUCUUUGGCC-GUCuCCCGGaCU-CU- -5'
29103 5' -57.2 NC_006146.1 + 170384 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167589 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167640 0.72 0.511679
Target:  5'- cGCGGGGcCCGGCGcgugccGGGGGCCcGGGGg -3'
miRNA:   3'- aCGUCUUuGGCCGU------CUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 60122 0.77 0.301414
Target:  5'- gUGCaAGggGCCGGgGGAGGGaCCUGGu- -3'
miRNA:   3'- -ACG-UCuuUGGCCgUCUCCC-GGACUcu -5'
29103 5' -57.2 NC_006146.1 + 168521 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 95309 0.75 0.368854
Target:  5'- cGguGggGCaguaGGCgcGGAGGGUCUGGGAg -3'
miRNA:   3'- aCguCuuUGg---CCG--UCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 169161 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169453 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167366 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 39422 0.73 0.464257
Target:  5'- aGCAGAAGuuGGCc-GGGGCCUGGc- -3'
miRNA:   3'- aCGUCUUUggCCGucUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 119823 0.73 0.492451
Target:  5'- gGCGGggGaCCGGcCAGAGGaCCUGgAGAu -3'
miRNA:   3'- aCGUCuuU-GGCC-GUCUCCcGGAC-UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.