miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 85602 0.68 0.742096
Target:  5'- cGCcucGGAAGCUGGCAccggggcaaAGGGCCaGAGAg -3'
miRNA:   3'- aCG---UCUUUGGCCGUc--------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 170492 0.71 0.581092
Target:  5'- aGCGGGgggcuuccccgGACCcccagcgcgcGGCGGgcGGGGCCUGAGGg -3'
miRNA:   3'- aCGUCU-----------UUGG----------CCGUC--UCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 95309 0.75 0.368854
Target:  5'- cGguGggGCaguaGGCgcGGAGGGUCUGGGAg -3'
miRNA:   3'- aCguCuuUGg---CCG--UCUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 147712 0.69 0.732372
Target:  5'- gGCcaGGAAGgCGGC--GGGGCCUGGGu -3'
miRNA:   3'- aCG--UCUUUgGCCGucUCCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 60122 0.77 0.301414
Target:  5'- gUGCaAGggGCCGGgGGAGGGaCCUGGu- -3'
miRNA:   3'- -ACG-UCuuUGGCCgUCUCCC-GGACUcu -5'
29103 5' -57.2 NC_006146.1 + 54814 0.67 0.815709
Target:  5'- uUGgAGAGGacCCGGCGGAGGGCgggccaaauCUG-GAa -3'
miRNA:   3'- -ACgUCUUU--GGCCGUCUCCCG---------GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 159981 0.73 0.473564
Target:  5'- cGCAGGAGCCcGCAGuuGGGGUCUGGc- -3'
miRNA:   3'- aCGUCUUUGGcCGUC--UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 139271 0.67 0.798128
Target:  5'- cUGCuGAggU-GGCAGAGGGCCcggccuUGAGc -3'
miRNA:   3'- -ACGuCUuuGgCCGUCUCCCGG------ACUCu -5'
29103 5' -57.2 NC_006146.1 + 57057 0.68 0.78911
Target:  5'- gGUuGAGGCgGG-AGGGGGCCUGAc- -3'
miRNA:   3'- aCGuCUUUGgCCgUCUCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 95451 0.68 0.779952
Target:  5'- aGCcGAGAagGGCAGgaaggGGGGCuCUGAGAg -3'
miRNA:   3'- aCGuCUUUggCCGUC-----UCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 44301 0.68 0.761251
Target:  5'- cGCc-AAACCGGUAGuGGGGgCUGGGGc -3'
miRNA:   3'- aCGucUUUGGCCGUC-UCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168349 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 169585 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 45047 0.69 0.722562
Target:  5'- gGCcGggGCCGGCucccuAGGGGcGgCUGAGGu -3'
miRNA:   3'- aCGuCuuUGGCCG-----UCUCC-CgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 105857 0.69 0.692704
Target:  5'- cGCAGu-GCCGcuccucGCAGuGGGCcCUGGGAc -3'
miRNA:   3'- aCGUCuuUGGC------CGUCuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 79693 0.71 0.610488
Target:  5'- aGCAGAGACCGGCcaacaggcaggcgGGGGGGaacaggaaaCCUG-GAu -3'
miRNA:   3'- aCGUCUUUGGCCG-------------UCUCCC---------GGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 168298 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 168521 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 150451 0.72 0.560987
Target:  5'- uUGUAGAAGCCGGaCAG-GGGCUgGAuGAc -3'
miRNA:   3'- -ACGUCUUUGGCC-GUCuCCCGGaCU-CU- -5'
29103 5' -57.2 NC_006146.1 + 167297 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.