miRNA display CGI


Results 61 - 80 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 169585 0.68 0.742096
Target:  5'- aGCGcGcgUCGGguG-GGGCCUGAGGg -3'
miRNA:   3'- aCGUcUuuGGCCguCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170212 0.68 0.755549
Target:  5'- gGCGGggGCCagcgcggggucccggGGCGGGGGGUC-GGGc -3'
miRNA:   3'- aCGUCuuUGG---------------CCGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 170093 0.73 0.491499
Target:  5'- gGCGGGAgggGCCGGCgccgcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG-------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 168229 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 52814 0.72 0.560987
Target:  5'- uUGCAcGAGGCCGugcccaggauGCGGAGGGCC-GAGc -3'
miRNA:   3'- -ACGU-CUUUGGC----------CGUCUCCCGGaCUCu -5'
29103 5' -57.2 NC_006146.1 + 169453 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169230 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 79758 0.7 0.621683
Target:  5'- gGCGGAGAagaaGGCacgAGAGGGCUgGAGAa -3'
miRNA:   3'- aCGUCUUUgg--CCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 51511 0.69 0.702719
Target:  5'- uUGUGGGGuCUGGCGG-GGGUUUGGGAg -3'
miRNA:   3'- -ACGUCUUuGGCCGUCuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 46780 0.69 0.722562
Target:  5'- gGCGGAuggcuggccGGCCGGCGcGAGGGCaaaggccuCUGGGu -3'
miRNA:   3'- aCGUCU---------UUGGCCGU-CUCCCG--------GACUCu -5'
29103 5' -57.2 NC_006146.1 + 121138 0.66 0.864249
Target:  5'- -aCAucAGCCGGCGucuGGGCCUGGGc -3'
miRNA:   3'- acGUcuUUGGCCGUcu-CCCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 53772 0.66 0.856639
Target:  5'- gGCGGAGgucucGCCGGaC-GAGGGCCUcGGc -3'
miRNA:   3'- aCGUCUU-----UGGCC-GuCUCCCGGAcUCu -5'
29103 5' -57.2 NC_006146.1 + 93892 0.68 0.770663
Target:  5'- gGCGGAAuuugCGGCAGggGGGGCCagcacgGAGGc -3'
miRNA:   3'- aCGUCUUug--GCCGUC--UCCCGGa-----CUCU- -5'
29103 5' -57.2 NC_006146.1 + 48238 0.68 0.78911
Target:  5'- gGguGAGcGCCGcGCGGAGGGCCc---- -3'
miRNA:   3'- aCguCUU-UGGC-CGUCUCCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 139271 0.67 0.798128
Target:  5'- cUGCuGAggU-GGCAGAGGGCCcggccuUGAGc -3'
miRNA:   3'- -ACGuCUuuGgCCGUCUCCCGG------ACUCu -5'
29103 5' -57.2 NC_006146.1 + 54814 0.67 0.815709
Target:  5'- uUGgAGAGGacCCGGCGGAGGGCgggccaaauCUG-GAa -3'
miRNA:   3'- -ACgUCUUU--GGCCGUCUCCCG---------GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 65186 0.67 0.83263
Target:  5'- gGCucuuGGAGCCcuaGGCGcucuGGGGGCcCUGGGAg -3'
miRNA:   3'- aCGu---CUUUGG---CCGU----CUCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 2476 0.67 0.83263
Target:  5'- gGCGGuguGGCCGGCGGGGgcaggcagcuGGCCgacGAGc -3'
miRNA:   3'- aCGUCu--UUGGCCGUCUC----------CCGGa--CUCu -5'
29103 5' -57.2 NC_006146.1 + 100286 0.66 0.848829
Target:  5'- aGCGGggGCUGGCA---GGCCUGc-- -3'
miRNA:   3'- aCGUCuuUGGCCGUcucCCGGACucu -5'
29103 5' -57.2 NC_006146.1 + 168496 0.66 0.848829
Target:  5'- gUGUGGAGGCCcGCGGAGaGGCCg---- -3'
miRNA:   3'- -ACGUCUUUGGcCGUCUC-CCGGacucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.