miRNA display CGI


Results 81 - 100 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 99562 0.69 0.703717
Target:  5'- gGCAGAGAUCGGgguccaggagguagaAGAcGGGCUUGGGGc -3'
miRNA:   3'- aCGUCUUUGGCCg--------------UCU-CCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 115156 0.7 0.672535
Target:  5'- uUGUuGAAAaacgcCCGGCAGGGacuguaaaGGCCUGGGAc -3'
miRNA:   3'- -ACGuCUUU-----GGCCGUCUC--------CCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170161 0.71 0.601343
Target:  5'- gGCGGc-GCCGGCcGGGGG-CUGAGGg -3'
miRNA:   3'- aCGUCuuUGGCCGuCUCCCgGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 170384 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 167589 0.71 0.581092
Target:  5'- gUGUGGAGGCCgGGCcuccccuGGGGGCCUcGGGGg -3'
miRNA:   3'- -ACGUCUUUGG-CCGu------CUCCCGGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 169161 0.73 0.502025
Target:  5'- gGCGGGAgggGCCGGCgccugcagGGGGGGCCggcGGGGc -3'
miRNA:   3'- aCGUCUU---UGGCCG--------UCUCCCGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 119823 0.73 0.492451
Target:  5'- gGCGGggGaCCGGcCAGAGGaCCUGgAGAu -3'
miRNA:   3'- aCGUCuuU-GGCC-GUCUCCcGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 12836 0.68 0.78911
Target:  5'- -cCGGcgGCCGGacccgaGGAGGcGCCUGGGGc -3'
miRNA:   3'- acGUCuuUGGCCg-----UCUCC-CGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 51469 0.67 0.804352
Target:  5'- gUGUGGAGAUgGGCGG-GGGCUgcggcgucgggaguUGGGAa -3'
miRNA:   3'- -ACGUCUUUGgCCGUCuCCCGG--------------ACUCU- -5'
29103 5' -57.2 NC_006146.1 + 75494 0.69 0.702719
Target:  5'- gGCGGggGCCGGCAaGAGcaccaGCgUGAGc -3'
miRNA:   3'- aCGUCuuUGGCCGU-CUCc----CGgACUCu -5'
29103 5' -57.2 NC_006146.1 + 124498 0.7 0.676581
Target:  5'- cGCGGGAcucggccuggucucgGCCcuGGCGagggacGGGGGCCUGGGGg -3'
miRNA:   3'- aCGUCUU---------------UGG--CCGU------CUCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 77915 0.7 0.672535
Target:  5'- cGCAGggGCgGGCGGccucgcAGGuGCCgGGGGu -3'
miRNA:   3'- aCGUCuuUGgCCGUC------UCC-CGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 100288 0.67 0.806997
Target:  5'- gGCGGAGGCa-GCAGAGG-CCgugGAGGc -3'
miRNA:   3'- aCGUCUUUGgcCGUCUCCcGGa--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 44513 0.67 0.799021
Target:  5'- cGCAGAGGCCccuggugggauccauGGCAGgauauccuggaaaaGGGGCC-GGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUC--------------UCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 157598 0.71 0.605406
Target:  5'- aGCGGAGACCaggaggacgccuggaGGCGGAcccgagGGGCuCUGGGGc -3'
miRNA:   3'- aCGUCUUUGG---------------CCGUCU------CCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 60786 0.71 0.611505
Target:  5'- aGUGGGAGCCGGacCAGguccAGGGCCUGGu- -3'
miRNA:   3'- aCGUCUUUGGCC--GUC----UCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 139361 0.66 0.864249
Target:  5'- gGCGGc-GCCGGgGGGGGuGCCUGc-- -3'
miRNA:   3'- aCGUCuuUGGCCgUCUCC-CGGACucu -5'
29103 5' -57.2 NC_006146.1 + 21990 0.7 0.642056
Target:  5'- cGgGGAAGCUGGUGGAGGGCaaGAc- -3'
miRNA:   3'- aCgUCUUUGGCCGUCUCCCGgaCUcu -5'
29103 5' -57.2 NC_006146.1 + 51144 0.7 0.652234
Target:  5'- aGCAGGugacgAAgCGGCAGAGGGCgccgCUGuGGg -3'
miRNA:   3'- aCGUCU-----UUgGCCGUCUCCCG----GACuCU- -5'
29103 5' -57.2 NC_006146.1 + 64210 0.7 0.662396
Target:  5'- cGCGGAGcuCCGGCAgGAGGcacaucugcGCCUGGGc -3'
miRNA:   3'- aCGUCUUu-GGCCGU-CUCC---------CGGACUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.