Results 1 - 20 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29103 | 5' | -57.2 | NC_006146.1 | + | 16371 | 0.67 | 0.824256 |
Target: 5'- cGCAGGAgaaACacaCAGAGGGCCUGuuGAu -3' miRNA: 3'- aCGUCUU---UGgccGUCUCCCGGACu-CU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 116580 | 0.66 | 0.864249 |
Target: 5'- aGCAcGA---CGGCGGAaGGCCUGAGc -3' miRNA: 3'- aCGU-CUuugGCCGUCUcCCGGACUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 52024 | 0.66 | 0.864249 |
Target: 5'- gGCAGuccgCGGCGGAGGGgCUGu-- -3' miRNA: 3'- aCGUCuuugGCCGUCUCCCgGACucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 139361 | 0.66 | 0.864249 |
Target: 5'- gGCGGc-GCCGGgGGGGGuGCCUGc-- -3' miRNA: 3'- aCGUCuuUGGCCgUCUCC-CGGACucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 117895 | 0.66 | 0.848829 |
Target: 5'- cGCGuGAGGCCcagGGCcagaAGAGGGgCCUcGAGAc -3' miRNA: 3'- aCGU-CUUUGG---CCG----UCUCCC-GGA-CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 139390 | 0.66 | 0.844049 |
Target: 5'- aGUAGGAgaaggcccccacggcGCCGGgGGAGGuGCCUgcuguuuaguagGAGAa -3' miRNA: 3'- aCGUCUU---------------UGGCCgUCUCC-CGGA------------CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 24193 | 0.67 | 0.83263 |
Target: 5'- gGCAGAGGagGGCu--GGGCCUGcGAg -3' miRNA: 3'- aCGUCUUUggCCGucuCCCGGACuCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 161770 | 0.67 | 0.83263 |
Target: 5'- aGgGGgcGCCugGGCGG-GGGCCUGAa- -3' miRNA: 3'- aCgUCuuUGG--CCGUCuCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 21924 | 0.67 | 0.824256 |
Target: 5'- cGgGGAAGCUGGCAGA-GGCCa---- -3' miRNA: 3'- aCgUCUUUGGCCGUCUcCCGGacucu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 15282 | 0.66 | 0.871651 |
Target: 5'- aGCGGcuGAACCGGagcgagggggaGGAGGGgCCgGAGGc -3' miRNA: 3'- aCGUC--UUUGGCCg----------UCUCCC-GGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 49058 | 0.66 | 0.871651 |
Target: 5'- aGCguaGGggGCUGGaucgaaGGAGGG-CUGAGGc -3' miRNA: 3'- aCG---UCuuUGGCCg-----UCUCCCgGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 106929 | 0.66 | 0.871651 |
Target: 5'- aGCAGAAccucaGCCGGCuGAGuGuGCUuucugGAGAg -3' miRNA: 3'- aCGUCUU-----UGGCCGuCUC-C-CGGa----CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 124993 | 0.66 | 0.871651 |
Target: 5'- gGCAcGGucACCGGCc--GGGCgCUGAGAa -3' miRNA: 3'- aCGU-CUu-UGGCCGucuCCCG-GACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 160969 | 0.66 | 0.871651 |
Target: 5'- uUGCAGAAucACCaggcauuGCAGAGugaGGCCUGAc- -3' miRNA: 3'- -ACGUCUU--UGGc------CGUCUC---CCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 163802 | 0.66 | 0.871651 |
Target: 5'- aGCGGAcauuGGCUGGCguugccagGGAGGGUg-GAGAa -3' miRNA: 3'- aCGUCU----UUGGCCG--------UCUCCCGgaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 157095 | 0.66 | 0.871651 |
Target: 5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3' miRNA: 3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 154017 | 0.66 | 0.871651 |
Target: 5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3' miRNA: 3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 150939 | 0.66 | 0.871651 |
Target: 5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3' miRNA: 3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 147861 | 0.66 | 0.871651 |
Target: 5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3' miRNA: 3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 144783 | 0.66 | 0.871651 |
Target: 5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3' miRNA: 3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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