miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29103 5' -57.2 NC_006146.1 + 154017 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 157095 0.66 0.871651
Target:  5'- gUGgGGAGACaaGCugaGGGGGGCCgGGGAg -3'
miRNA:   3'- -ACgUCUUUGgcCG---UCUCCCGGaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 163802 0.66 0.871651
Target:  5'- aGCGGAcauuGGCUGGCguugccagGGAGGGUg-GAGAa -3'
miRNA:   3'- aCGUCU----UUGGCCG--------UCUCCCGgaCUCU- -5'
29103 5' -57.2 NC_006146.1 + 160969 0.66 0.871651
Target:  5'- uUGCAGAAucACCaggcauuGCAGAGugaGGCCUGAc- -3'
miRNA:   3'- -ACGUCUU--UGGc------CGUCUC---CCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 124993 0.66 0.871651
Target:  5'- gGCAcGGucACCGGCc--GGGCgCUGAGAa -3'
miRNA:   3'- aCGU-CUu-UGGCCGucuCCCG-GACUCU- -5'
29103 5' -57.2 NC_006146.1 + 139361 0.66 0.864249
Target:  5'- gGCGGc-GCCGGgGGGGGuGCCUGc-- -3'
miRNA:   3'- aCGUCuuUGGCCgUCUCC-CGGACucu -5'
29103 5' -57.2 NC_006146.1 + 117895 0.66 0.848829
Target:  5'- cGCGuGAGGCCcagGGCcagaAGAGGGgCCUcGAGAc -3'
miRNA:   3'- aCGU-CUUUGG---CCG----UCUCCC-GGA-CUCU- -5'
29103 5' -57.2 NC_006146.1 + 65187 0.67 0.814845
Target:  5'- aUGCGGAuguguguGACUGGCAGGGGGag-GAa- -3'
miRNA:   3'- -ACGUCU-------UUGGCCGUCUCCCggaCUcu -5'
29103 5' -57.2 NC_006146.1 + 23975 0.67 0.815709
Target:  5'- gUGgGGGAGCCGGagAGGGGGCgaaaGAGGa -3'
miRNA:   3'- -ACgUCUUUGGCCg-UCUCCCGga--CUCU- -5'
29103 5' -57.2 NC_006146.1 + 100204 0.67 0.815709
Target:  5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3'
miRNA:   3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5'
29103 5' -57.2 NC_006146.1 + 146789 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 149867 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 152945 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 88799 0.67 0.82171
Target:  5'- gGCGuGGAGCCugcugggcauguuuGGCu--GGGCCUGAGGc -3'
miRNA:   3'- aCGU-CUUUGG--------------CCGucuCCCGGACUCU- -5'
29103 5' -57.2 NC_006146.1 + 156023 0.67 0.815709
Target:  5'- gGCcuGggGCCu-CGGAGGGCCUGgAGGg -3'
miRNA:   3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5'
29103 5' -57.2 NC_006146.1 + 16371 0.67 0.824256
Target:  5'- cGCAGGAgaaACacaCAGAGGGCCUGuuGAu -3'
miRNA:   3'- aCGUCUU---UGgccGUCUCCCGGACu-CU- -5'
29103 5' -57.2 NC_006146.1 + 21924 0.67 0.824256
Target:  5'- cGgGGAAGCUGGCAGA-GGCCa---- -3'
miRNA:   3'- aCgUCUUUGGCCGUCUcCCGGacucu -5'
29103 5' -57.2 NC_006146.1 + 161770 0.67 0.83263
Target:  5'- aGgGGgcGCCugGGCGG-GGGCCUGAa- -3'
miRNA:   3'- aCgUCuuUGG--CCGUCuCCCGGACUcu -5'
29103 5' -57.2 NC_006146.1 + 24193 0.67 0.83263
Target:  5'- gGCAGAGGagGGCu--GGGCCUGcGAg -3'
miRNA:   3'- aCGUCUUUggCCGucuCCCGGACuCU- -5'
29103 5' -57.2 NC_006146.1 + 139390 0.66 0.844049
Target:  5'- aGUAGGAgaaggcccccacggcGCCGGgGGAGGuGCCUgcuguuuaguagGAGAa -3'
miRNA:   3'- aCGUCUU---------------UGGCCgUCUCC-CGGA------------CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.