Results 81 - 100 of 189 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29103 | 5' | -57.2 | NC_006146.1 | + | 147603 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 144525 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 141447 | 0.68 | 0.770663 |
Target: 5'- gGUGGGGAgUGGCcagggaggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG----------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 33208 | 0.68 | 0.770663 |
Target: 5'- gGgGGAGGCCGGaGGGGGaGCC-GGGAu -3' miRNA: 3'- aCgUCUUUGGCCgUCUCC-CGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 150681 | 0.68 | 0.761251 |
Target: 5'- gGUGGGGAgUGGCcagggggacGGAGGGCCUGGc- -3' miRNA: 3'- aCGUCUUUgGCCG---------UCUCCCGGACUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 115188 | 0.68 | 0.751726 |
Target: 5'- cGCGGAGGCCaGCGGcGGGCa-GAGc -3' miRNA: 3'- aCGUCUUUGGcCGUCuCCCGgaCUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 61600 | 0.68 | 0.751726 |
Target: 5'- cUGCAGcgGCC-GCGGccGGGGCC-GAGAu -3' miRNA: 3'- -ACGUCuuUGGcCGUC--UCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 86546 | 0.68 | 0.78911 |
Target: 5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3' miRNA: 3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 86580 | 0.68 | 0.78911 |
Target: 5'- gGCAGcuGGGCUugaggGGCAGcuGGGCUUGAGGg -3' miRNA: 3'- aCGUC--UUUGG-----CCGUCu-CCCGGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 100204 | 0.67 | 0.815709 |
Target: 5'- cGcCAGAGACaccaGGCGGcccGuGGCCUGAGu -3' miRNA: 3'- aC-GUCUUUGg---CCGUCu--C-CCGGACUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 23975 | 0.67 | 0.815709 |
Target: 5'- gUGgGGGAGCCGGagAGGGGGCgaaaGAGGa -3' miRNA: 3'- -ACgUCUUUGGCCg-UCUCCCGga--CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 65187 | 0.67 | 0.814845 |
Target: 5'- aUGCGGAuguguguGACUGGCAGGGGGag-GAa- -3' miRNA: 3'- -ACGUCU-------UUGGCCGUCUCCCggaCUcu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 100288 | 0.67 | 0.806997 |
Target: 5'- gGCGGAGGCa-GCAGAGG-CCgugGAGGc -3' miRNA: 3'- aCGUCUUUGgcCGUCUCCcGGa--CUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 44513 | 0.67 | 0.799021 |
Target: 5'- cGCAGAGGCCccuggugggauccauGGCAGgauauccuggaaaaGGGGCC-GGGGc -3' miRNA: 3'- aCGUCUUUGG---------------CCGUC--------------UCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 143711 | 0.67 | 0.798127 |
Target: 5'- aGCcuGggGCCu-CGGAGGGCCUGgAGGg -3' miRNA: 3'- aCGu-CuuUGGccGUCUCCCGGAC-UCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 108872 | 0.67 | 0.798127 |
Target: 5'- gGCuGGAAugCGGCAGA-GGCC-GAGc -3' miRNA: 3'- aCG-UCUUugGCCGUCUcCCGGaCUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 65770 | 0.67 | 0.798127 |
Target: 5'- aGCuGGAACgGGUAGAGGaGCUucgUGAGc -3' miRNA: 3'- aCGuCUUUGgCCGUCUCC-CGG---ACUCu -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 39858 | 0.67 | 0.798127 |
Target: 5'- gGCGGggGcugugugcCCGGgGGAGGaGgCUGAGGc -3' miRNA: 3'- aCGUCuuU--------GGCCgUCUCC-CgGACUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 129237 | 0.67 | 0.794537 |
Target: 5'- aGCAGGGACgGGCccaggugaggcgcGAGGGUCaGGGAu -3' miRNA: 3'- aCGUCUUUGgCCGu------------CUCCCGGaCUCU- -5' |
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29103 | 5' | -57.2 | NC_006146.1 | + | 115405 | 0.68 | 0.78911 |
Target: 5'- gUGCAGGAggcaGCUGGCGGccGGGCCUc--- -3' miRNA: 3'- -ACGUCUU----UGGCCGUCu-CCCGGAcucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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