miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 3' -57 NC_006146.1 + 39683 0.66 0.885813
Target:  5'- gGCGgGCUCCuGGGCCU-GCAGCGc-- -3'
miRNA:   3'- -CGCgUGGGGuUCCGGGuCGUUGUagu -5'
29104 3' -57 NC_006146.1 + 95084 0.66 0.885813
Target:  5'- gGUGCAuguCCCgCAGGGCCUcgaaGGCGGCGc-- -3'
miRNA:   3'- -CGCGU---GGG-GUUCCGGG----UCGUUGUagu -5'
29104 3' -57 NC_006146.1 + 56471 0.66 0.885813
Target:  5'- cCGaagauCCCCA--GCuCCAGCGGCAUCAg -3'
miRNA:   3'- cGCgu---GGGGUucCG-GGUCGUUGUAGU- -5'
29104 3' -57 NC_006146.1 + 102536 0.66 0.881656
Target:  5'- -aGCACCgCCAcggggaucuccacagAGGCguCCAGCAGCAg-- -3'
miRNA:   3'- cgCGUGG-GGU---------------UCCG--GGUCGUUGUagu -5'
29104 3' -57 NC_006146.1 + 116570 0.66 0.878841
Target:  5'- cGCGUGCCCCucauccacguaGGGGCCaagguGCAGCcugaaAUCAu -3'
miRNA:   3'- -CGCGUGGGG-----------UUCCGGgu---CGUUG-----UAGU- -5'
29104 3' -57 NC_006146.1 + 150176 0.66 0.878841
Target:  5'- gGCGCGgguCCUCGcAGGCCgcCAGCAGCuUCu -3'
miRNA:   3'- -CGCGU---GGGGU-UCCGG--GUCGUUGuAGu -5'
29104 3' -57 NC_006146.1 + 148507 0.66 0.878841
Target:  5'- gGUGgACCCCGGGGCCagGGUggagAGCAUg- -3'
miRNA:   3'- -CGCgUGGGGUUCCGGg-UCG----UUGUAgu -5'
29104 3' -57 NC_006146.1 + 99135 0.66 0.878841
Target:  5'- gGCGU-CUCCAcagGGGCuCCAGCGACcggCAg -3'
miRNA:   3'- -CGCGuGGGGU---UCCG-GGUCGUUGua-GU- -5'
29104 3' -57 NC_006146.1 + 92484 0.66 0.878841
Target:  5'- uCGCGgugggaggUCCagaAGGGCCCAGCGGCuccuAUCAg -3'
miRNA:   3'- cGCGU--------GGGg--UUCCGGGUCGUUG----UAGU- -5'
29104 3' -57 NC_006146.1 + 129385 0.66 0.878841
Target:  5'- cGCGgAUCCC-GGGCgUCAGCcgGGCGUCGu -3'
miRNA:   3'- -CGCgUGGGGuUCCG-GGUCG--UUGUAGU- -5'
29104 3' -57 NC_006146.1 + 121881 0.66 0.871651
Target:  5'- cCGCGCCCCGGagaacGCCCuGCGGC-UCc -3'
miRNA:   3'- cGCGUGGGGUUc----CGGGuCGUUGuAGu -5'
29104 3' -57 NC_006146.1 + 24698 0.66 0.871651
Target:  5'- cCGCuuACCCCGgaGGaGCCCAuGCAGCAc-- -3'
miRNA:   3'- cGCG--UGGGGU--UC-CGGGU-CGUUGUagu -5'
29104 3' -57 NC_006146.1 + 47568 0.66 0.864249
Target:  5'- gGCGagACCCCugacGGCCCcGCAgACGUCc -3'
miRNA:   3'- -CGCg-UGGGGuu--CCGGGuCGU-UGUAGu -5'
29104 3' -57 NC_006146.1 + 170685 0.66 0.863497
Target:  5'- gGgGCGCCCCGgggaccgucgcggGGGCaCCGGC-GCGUa- -3'
miRNA:   3'- -CgCGUGGGGU-------------UCCG-GGUCGuUGUAgu -5'
29104 3' -57 NC_006146.1 + 142567 0.66 0.856639
Target:  5'- -aGCuACCCCAAGGCCaccgGGCGGgGcCAg -3'
miRNA:   3'- cgCG-UGGGGUUCCGGg---UCGUUgUaGU- -5'
29104 3' -57 NC_006146.1 + 145645 0.66 0.856639
Target:  5'- -aGCuACCCCAAGGCCaccgGGCGGgGcCAg -3'
miRNA:   3'- cgCG-UGGGGUUCCGGg---UCGUUgUaGU- -5'
29104 3' -57 NC_006146.1 + 148722 0.66 0.856639
Target:  5'- -aGCuACCCCAAGGCCaccgGGCGGgGcCAg -3'
miRNA:   3'- cgCG-UGGGGUUCCGGg---UCGUUgUaGU- -5'
29104 3' -57 NC_006146.1 + 151800 0.66 0.856639
Target:  5'- -aGCuACCCCAAGGCCaccgGGCGGgGcCAg -3'
miRNA:   3'- cgCG-UGGGGUUCCGGg---UCGUUgUaGU- -5'
29104 3' -57 NC_006146.1 + 154878 0.66 0.856639
Target:  5'- -aGCuACCCCAAGGCCaccgGGCGGgGcCAg -3'
miRNA:   3'- cgCG-UGGGGUUCCGGg---UCGUUgUaGU- -5'
29104 3' -57 NC_006146.1 + 114159 0.66 0.856639
Target:  5'- gGCGCAUgCU--GGCCCugGGCAGCAgggUCAc -3'
miRNA:   3'- -CGCGUGgGGuuCCGGG--UCGUUGU---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.