miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 3' -57 NC_006146.1 + 129418 1.1 0.001911
Target:  5'- cGCGCACCCCAAGGCCCAGCAACAUCAc -3'
miRNA:   3'- -CGCGUGGGGUUCCGGGUCGUUGUAGU- -5'
29104 3' -57 NC_006146.1 + 124826 0.8 0.200697
Target:  5'- uCGC-CCCCGAGGCCCuGCAGCAg-- -3'
miRNA:   3'- cGCGuGGGGUUCCGGGuCGUUGUagu -5'
29104 3' -57 NC_006146.1 + 11628 0.8 0.210829
Target:  5'- uGCGaggGCCCCGAGGCCCgcguGGCGGCGUUg -3'
miRNA:   3'- -CGCg--UGGGGUUCCGGG----UCGUUGUAGu -5'
29104 3' -57 NC_006146.1 + 99043 0.76 0.353009
Target:  5'- -gGCcCCCCAGGGCCCGGCGgguGUCGg -3'
miRNA:   3'- cgCGuGGGGUUCCGGGUCGUug-UAGU- -5'
29104 3' -57 NC_006146.1 + 169566 0.75 0.368854
Target:  5'- gGgGCuuCCCCGGGGCCCgAGCGcGCGUCGg -3'
miRNA:   3'- -CgCGu-GGGGUUCCGGG-UCGU-UGUAGU- -5'
29104 3' -57 NC_006146.1 + 168634 0.75 0.368854
Target:  5'- gGgGCuuCCCCGGGGCCCgAGCGcGCGUCGg -3'
miRNA:   3'- -CgCGu-GGGGUUCCGGG-UCGU-UGUAGU- -5'
29104 3' -57 NC_006146.1 + 167701 0.75 0.368854
Target:  5'- gGgGCuuCCCCGGGGCCCgAGCGcGCGUCGg -3'
miRNA:   3'- -CgCGu-GGGGUUCCGGG-UCGU-UGUAGU- -5'
29104 3' -57 NC_006146.1 + 19207 0.75 0.401977
Target:  5'- gGCGCGCCUCAGGGCCUGGaCGugGa-- -3'
miRNA:   3'- -CGCGUGGGGUUCCGGGUC-GUugUagu -5'
29104 3' -57 NC_006146.1 + 2710 0.74 0.464257
Target:  5'- cGCGCGgCCCcGGGCCCucccCGACAUCc -3'
miRNA:   3'- -CGCGUgGGGuUCCGGGuc--GUUGUAGu -5'
29104 3' -57 NC_006146.1 + 846 0.74 0.464257
Target:  5'- cGCGCGgCCCcGGGCCCucccCGACAUCc -3'
miRNA:   3'- -CGCGUgGGGuUCCGGGuc--GUUGUAGu -5'
29104 3' -57 NC_006146.1 + 3642 0.74 0.464257
Target:  5'- cGCGCGgCCCcGGGCCCucccCGACAUCc -3'
miRNA:   3'- -CGCGUgGGGuUCCGGGuc--GUUGUAGu -5'
29104 3' -57 NC_006146.1 + 1778 0.74 0.464257
Target:  5'- cGCGCGgCCCcGGGCCCucccCGACAUCc -3'
miRNA:   3'- -CGCGUgGGGuUCCGGGuc--GUUGUAGu -5'
29104 3' -57 NC_006146.1 + 169986 0.73 0.492451
Target:  5'- gGCGCGCgCCCGGGGUCCcggggGGCGGCGcgCGg -3'
miRNA:   3'- -CGCGUG-GGGUUCCGGG-----UCGUUGUa-GU- -5'
29104 3' -57 NC_006146.1 + 168122 0.73 0.492451
Target:  5'- gGCGCGCgCCCGGGGUCCcggggGGCGGCGcgCGg -3'
miRNA:   3'- -CGCGUG-GGGUUCCGGG-----UCGUUGUa-GU- -5'
29104 3' -57 NC_006146.1 + 167190 0.73 0.492451
Target:  5'- gGCGCGCgCCCGGGGUCCcggggGGCGGCGcgCGg -3'
miRNA:   3'- -CGCGUG-GGGUUCCGGG-----UCGUUGUa-GU- -5'
29104 3' -57 NC_006146.1 + 169054 0.73 0.492451
Target:  5'- gGCGCGCgCCCGGGGUCCcggggGGCGGCGcgCGg -3'
miRNA:   3'- -CGCGUG-GGGUUCCGGG-----UCGUUGUa-GU- -5'
29104 3' -57 NC_006146.1 + 84409 0.73 0.502025
Target:  5'- aGCuGCcCCUCAAGGCCCAGCuGCcccUCAa -3'
miRNA:   3'- -CG-CGuGGGGUUCCGGGUCGuUGu--AGU- -5'
29104 3' -57 NC_006146.1 + 11890 0.73 0.502025
Target:  5'- -gGCACCaaCGGGGCCCGGCAACuacgCGg -3'
miRNA:   3'- cgCGUGGg-GUUCCGGGUCGUUGua--GU- -5'
29104 3' -57 NC_006146.1 + 118637 0.73 0.511679
Target:  5'- gGgGCG-CCCGGGGCCCAGUAcacguGCGUCc -3'
miRNA:   3'- -CgCGUgGGGUUCCGGGUCGU-----UGUAGu -5'
29104 3' -57 NC_006146.1 + 129913 0.73 0.511679
Target:  5'- cUGCGCCCUggGGCgCCGGCGcgGCAcCAc -3'
miRNA:   3'- cGCGUGGGGuuCCG-GGUCGU--UGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.