Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29104 | 5' | -55.2 | NC_006146.1 | + | 148422 | 0.69 | 0.817333 |
Target: 5'- uGCCACugaggaaggCGCUGUAugaucUGGUGCAGGCa-- -3' miRNA: 3'- -CGGUG---------GCGGCGUu----ACCACGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 117749 | 0.69 | 0.817333 |
Target: 5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3' miRNA: 3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 34242 | 0.69 | 0.825945 |
Target: 5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3' miRNA: 3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 138072 | 0.69 | 0.825945 |
Target: 5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3' miRNA: 3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 164387 | 0.69 | 0.825945 |
Target: 5'- uGCCGCCGCCGCcaagGGU-CAggAGCa-- -3' miRNA: 3'- -CGGUGGCGGCGuua-CCAcGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 44296 | 0.69 | 0.825945 |
Target: 5'- aCCACCGCCaaacCGGUaGUGgGGGCUGGg -3' miRNA: 3'- cGGUGGCGGc---GUUAcCACgUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42634 | 0.69 | 0.825945 |
Target: 5'- gGCCGCCGCCGUgggccucacguAGUGG-GCccaGAGgUAGc -3' miRNA: 3'- -CGGUGGCGGCG-----------UUACCaCG---UUCgAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 168092 | 0.68 | 0.858531 |
Target: 5'- cGCCACCGCCuuGGucUGGaagGCcuGCUGGc -3' miRNA: 3'- -CGGUGGCGGcgUU--ACCa--CGuuCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 63857 | 0.68 | 0.866176 |
Target: 5'- aGCCACuCGCCaCAcgGGUGCcAGUc-- -3' miRNA: 3'- -CGGUG-GCGGcGUuaCCACGuUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42669 | 0.67 | 0.887808 |
Target: 5'- uGCgGCuCGcCCGCGGUGGgcUGCcugAGGCUGGc -3' miRNA: 3'- -CGgUG-GC-GGCGUUACC--ACG---UUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 11371 | 0.67 | 0.887808 |
Target: 5'- cGCUGCgCGUCagGCAgGUGG-GCAAGCUGGu -3' miRNA: 3'- -CGGUG-GCGG--CGU-UACCaCGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 11487 | 0.67 | 0.887808 |
Target: 5'- aGCCACCcggacucggggGCCGuCAugaucGUGGacagcgcggccUGCGAGCUGGc -3' miRNA: 3'- -CGGUGG-----------CGGC-GU-----UACC-----------ACGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 39836 | 0.67 | 0.887808 |
Target: 5'- gGCCuCgGCCGCAcaGUGGgccgGCGggGGCUGu -3' miRNA: 3'- -CGGuGgCGGCGU--UACCa---CGU--UCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 148543 | 0.67 | 0.894567 |
Target: 5'- gGCCACUGCCaUGAUgGGUGguGGCcGGu -3' miRNA: 3'- -CGGUGGCGGcGUUA-CCACguUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 66307 | 0.67 | 0.907385 |
Target: 5'- gGCCAUCGUCGgAgacGUGGUaGCAgaagguuuugggAGCUGGc -3' miRNA: 3'- -CGGUGGCGGCgU---UACCA-CGU------------UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 69034 | 0.67 | 0.907385 |
Target: 5'- cGCCACCGuccucgccCCGCcacccGUGGUGCGgcAGCc-- -3' miRNA: 3'- -CGGUGGC--------GGCGu----UACCACGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 59698 | 0.67 | 0.912844 |
Target: 5'- uGCCGgUGCCGgAGgcggagguguuguUGGUGUAGGCcGGg -3' miRNA: 3'- -CGGUgGCGGCgUU-------------ACCACGUUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42754 | 0.67 | 0.913438 |
Target: 5'- cGCCugCGgCaGCAGggccgacaGGUGCAGGCg-- -3' miRNA: 3'- -CGGugGCgG-CGUUa-------CCACGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 130480 | 0.67 | 0.913438 |
Target: 5'- gGCCGCUGCCGCcccgGGUG---GCUAc -3' miRNA: 3'- -CGGUGGCGGCGuua-CCACguuCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 127437 | 0.66 | 0.91925 |
Target: 5'- gGCCGCCgaggaggcuGCCGCuccagauGUGGcggcccGCAGGCUAc -3' miRNA: 3'- -CGGUGG---------CGGCGu------UACCa-----CGUUCGAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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