Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29104 | 5' | -55.2 | NC_006146.1 | + | 168092 | 0.68 | 0.858531 |
Target: 5'- cGCCACCGCCuuGGucUGGaagGCcuGCUGGc -3' miRNA: 3'- -CGGUGGCGGcgUU--ACCa--CGuuCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 34242 | 0.69 | 0.825945 |
Target: 5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3' miRNA: 3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 138072 | 0.69 | 0.825945 |
Target: 5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3' miRNA: 3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 164387 | 0.69 | 0.825945 |
Target: 5'- uGCCGCCGCCGCcaagGGU-CAggAGCa-- -3' miRNA: 3'- -CGGUGGCGGCGuua-CCAcGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 44296 | 0.69 | 0.825945 |
Target: 5'- aCCACCGCCaaacCGGUaGUGgGGGCUGGg -3' miRNA: 3'- cGGUGGCGGc---GUUAcCACgUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42634 | 0.69 | 0.825945 |
Target: 5'- gGCCGCCGCCGUgggccucacguAGUGG-GCccaGAGgUAGc -3' miRNA: 3'- -CGGUGGCGGCG-----------UUACCaCG---UUCgAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 117749 | 0.69 | 0.817333 |
Target: 5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3' miRNA: 3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 44821 | 0.69 | 0.817333 |
Target: 5'- gGCC-CCGCUGCGGcUGGUGacgGAGgUGGg -3' miRNA: 3'- -CGGuGGCGGCGUU-ACCACg--UUCgAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 148422 | 0.69 | 0.817333 |
Target: 5'- uGCCACugaggaaggCGCUGUAugaucUGGUGCAGGCa-- -3' miRNA: 3'- -CGGUG---------GCGGCGUu----ACCACGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 159929 | 0.69 | 0.808551 |
Target: 5'- -gCGCCGCCuGCuuuaGGUGCAcuguggcaGGCUGGg -3' miRNA: 3'- cgGUGGCGG-CGuua-CCACGU--------UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 53041 | 0.69 | 0.799606 |
Target: 5'- gGCCGCCGCCGagaGGUaaGGgggGCGGGUgGGg -3' miRNA: 3'- -CGGUGGCGGCg--UUA--CCa--CGUUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 47809 | 0.69 | 0.799606 |
Target: 5'- cCCACCGCCGUcucAUGGgcuCGGGCUGc -3' miRNA: 3'- cGGUGGCGGCGu--UACCac-GUUCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 116493 | 0.69 | 0.799606 |
Target: 5'- uCCACCcccagGCCGCAcaugugggcguUGGUGCAGGCcGGu -3' miRNA: 3'- cGGUGG-----CGGCGUu----------ACCACGUUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 55960 | 0.7 | 0.771886 |
Target: 5'- cGCCAUCGCCGCccaggGGUaGC-GGUUGGu -3' miRNA: 3'- -CGGUGGCGGCGuua--CCA-CGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 55190 | 0.7 | 0.752759 |
Target: 5'- gGCUGCgGCCGCGGcGG-GCGAGCg-- -3' miRNA: 3'- -CGGUGgCGGCGUUaCCaCGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 19738 | 0.71 | 0.693095 |
Target: 5'- cGCUACCGCCGCAucc-UGCugacGCUGGg -3' miRNA: 3'- -CGGUGGCGGCGUuaccACGuu--CGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 154657 | 0.71 | 0.693095 |
Target: 5'- uGCCGCCgGCUGCAccGUGGUGgCGGggggcgcugcuGCUGGg -3' miRNA: 3'- -CGGUGG-CGGCGU--UACCAC-GUU-----------CGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 170102 | 0.71 | 0.693095 |
Target: 5'- gGCCGgCGCCGCAggGGggGCcGGCgGGg -3' miRNA: 3'- -CGGUgGCGGCGUuaCCa-CGuUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 115541 | 0.72 | 0.672695 |
Target: 5'- cGUC-CCGCgCGCGGUGGcGgGGGCUGGa -3' miRNA: 3'- -CGGuGGCG-GCGUUACCaCgUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 120675 | 0.72 | 0.66244 |
Target: 5'- aGCCACCGCCaccaucuCGcgGGUGCAcgGGCg-- -3' miRNA: 3'- -CGGUGGCGGc------GUuaCCACGU--UCGauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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