Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29104 | 5' | -55.2 | NC_006146.1 | + | 57935 | 0.74 | 0.529781 |
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Target: 5'- gGCCGgCGCCGCcAUGGUGCu-GCa-- -3' miRNA: 3'- -CGGUgGCGGCGuUACCACGuuCGauc -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 51168 | 0.73 | 0.600686 |
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Target: 5'- cGCCGCUGUgGguGUGGaagggggucUGCGGGCUGGc -3' miRNA: 3'- -CGGUGGCGgCguUACC---------ACGUUCGAUC- -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 79815 | 0.72 | 0.652161 |
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Target: 5'- uGCCACUGCCGCAGcuggaaGGUGUGAGg--- -3' miRNA: 3'- -CGGUGGCGGCGUUa-----CCACGUUCgauc -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 115541 | 0.72 | 0.672695 |
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Target: 5'- cGUC-CCGCgCGCGGUGGcGgGGGCUGGa -3' miRNA: 3'- -CGGuGGCG-GCGUUACCaCgUUCGAUC- -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 19738 | 0.71 | 0.693095 |
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Target: 5'- cGCUACCGCCGCAucc-UGCugacGCUGGg -3' miRNA: 3'- -CGGUGGCGGCGUuaccACGuu--CGAUC- -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 159929 | 0.69 | 0.808551 |
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Target: 5'- -gCGCCGCCuGCuuuaGGUGCAcuguggcaGGCUGGg -3' miRNA: 3'- cgGUGGCGG-CGuua-CCACGU--------UCGAUC- -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 117749 | 0.69 | 0.817333 |
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Target: 5'- gGCCACCGCCGCAGUcccgccacagaGGagGCAAccgucGCg-- -3' miRNA: 3'- -CGGUGGCGGCGUUA-----------CCa-CGUU-----CGauc -5' |
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| 29104 | 5' | -55.2 | NC_006146.1 | + | 83165 | 0.66 | 0.94008 |
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Target: 5'- aGCCACagaggGCCuuGAUuucaaGGUGCAgcAGCUGGg -3' miRNA: 3'- -CGGUGg----CGGcgUUA-----CCACGU--UCGAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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