Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29104 | 5' | -55.2 | NC_006146.1 | + | 138072 | 0.69 | 0.825945 |
Target: 5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3' miRNA: 3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 164387 | 0.69 | 0.825945 |
Target: 5'- uGCCGCCGCCGCcaagGGU-CAggAGCa-- -3' miRNA: 3'- -CGGUGGCGGCGuua-CCAcGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 44296 | 0.69 | 0.825945 |
Target: 5'- aCCACCGCCaaacCGGUaGUGgGGGCUGGg -3' miRNA: 3'- cGGUGGCGGc---GUUAcCACgUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 63857 | 0.68 | 0.866176 |
Target: 5'- aGCCACuCGCCaCAcgGGUGCcAGUc-- -3' miRNA: 3'- -CGGUG-GCGGcGUuaCCACGuUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 42669 | 0.67 | 0.887808 |
Target: 5'- uGCgGCuCGcCCGCGGUGGgcUGCcugAGGCUGGc -3' miRNA: 3'- -CGgUG-GC-GGCGUUACC--ACG---UUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 148543 | 0.67 | 0.894567 |
Target: 5'- gGCCACUGCCaUGAUgGGUGguGGCcGGu -3' miRNA: 3'- -CGGUGGCGGcGUUA-CCACguUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 66307 | 0.67 | 0.907385 |
Target: 5'- gGCCAUCGUCGgAgacGUGGUaGCAgaagguuuugggAGCUGGc -3' miRNA: 3'- -CGGUGGCGGCgU---UACCA-CGU------------UCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 69034 | 0.67 | 0.907385 |
Target: 5'- cGCCACCGuccucgccCCGCcacccGUGGUGCGgcAGCc-- -3' miRNA: 3'- -CGGUGGC--------GGCGu----UACCACGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 148422 | 0.69 | 0.817333 |
Target: 5'- uGCCACugaggaaggCGCUGUAugaucUGGUGCAGGCa-- -3' miRNA: 3'- -CGGUG---------GCGGCGUu----ACCACGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 53041 | 0.69 | 0.799606 |
Target: 5'- gGCCGCCGCCGagaGGUaaGGgggGCGGGUgGGg -3' miRNA: 3'- -CGGUGGCGGCg--UUA--CCa--CGUUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 47809 | 0.69 | 0.799606 |
Target: 5'- cCCACCGCCGUcucAUGGgcuCGGGCUGc -3' miRNA: 3'- cGGUGGCGGCGu--UACCac-GUUCGAUc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 33001 | 0.76 | 0.443685 |
Target: 5'- uGCCGCCGCUacccccggGgGAUGGUuaaaGCGGGCUAGg -3' miRNA: 3'- -CGGUGGCGG--------CgUUACCA----CGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 4895 | 0.73 | 0.590431 |
Target: 5'- gGCCugCGCCGCc-UGGUGacaGAGCcGGa -3' miRNA: 3'- -CGGugGCGGCGuuACCACg--UUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 45121 | 0.72 | 0.652161 |
Target: 5'- gGCCggugACCGCCGgGAgccuUGGgcuuUGCGGGCUGGg -3' miRNA: 3'- -CGG----UGGCGGCgUU----ACC----ACGUUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 120675 | 0.72 | 0.66244 |
Target: 5'- aGCCACCGCCaccaucuCGcgGGUGCAcgGGCg-- -3' miRNA: 3'- -CGGUGGCGGc------GUuaCCACGU--UCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 154657 | 0.71 | 0.693095 |
Target: 5'- uGCCGCCgGCUGCAccGUGGUGgCGGggggcgcugcuGCUGGg -3' miRNA: 3'- -CGGUGG-CGGCGU--UACCAC-GUU-----------CGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 170102 | 0.71 | 0.693095 |
Target: 5'- gGCCGgCGCCGCAggGGggGCcGGCgGGg -3' miRNA: 3'- -CGGUgGCGGCGUuaCCa-CGuUCGaUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 55190 | 0.7 | 0.752759 |
Target: 5'- gGCUGCgGCCGCGGcGG-GCGAGCg-- -3' miRNA: 3'- -CGGUGgCGGCGUUaCCaCGUUCGauc -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 55960 | 0.7 | 0.771886 |
Target: 5'- cGCCAUCGCCGCccaggGGUaGC-GGUUGGu -3' miRNA: 3'- -CGGUGGCGGCGuua--CCA-CGuUCGAUC- -5' |
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29104 | 5' | -55.2 | NC_006146.1 | + | 116493 | 0.69 | 0.799606 |
Target: 5'- uCCACCcccagGCCGCAcaugugggcguUGGUGCAGGCcGGu -3' miRNA: 3'- cGGUGG-----CGGCGUu----------ACCACGUUCGaUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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