miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29104 5' -55.2 NC_006146.1 + 138072 0.69 0.825945
Target:  5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3'
miRNA:   3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 4895 0.73 0.590431
Target:  5'- gGCCugCGCCGCc-UGGUGacaGAGCcGGa -3'
miRNA:   3'- -CGGugGCGGCGuuACCACg--UUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 33001 0.76 0.443685
Target:  5'- uGCCGCCGCUacccccggGgGAUGGUuaaaGCGGGCUAGg -3'
miRNA:   3'- -CGGUGGCGG--------CgUUACCA----CGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 129452 1.1 0.00311
Target:  5'- uGCCACCGCCGCAAUGGUGCAAGCUAGc -3'
miRNA:   3'- -CGGUGGCGGCGUUACCACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 45121 0.72 0.652161
Target:  5'- gGCCggugACCGCCGgGAgccuUGGgcuuUGCGGGCUGGg -3'
miRNA:   3'- -CGG----UGGCGGCgUU----ACC----ACGUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 120675 0.72 0.66244
Target:  5'- aGCCACCGCCaccaucuCGcgGGUGCAcgGGCg-- -3'
miRNA:   3'- -CGGUGGCGGc------GUuaCCACGU--UCGauc -5'
29104 5' -55.2 NC_006146.1 + 154657 0.71 0.693095
Target:  5'- uGCCGCCgGCUGCAccGUGGUGgCGGggggcgcugcuGCUGGg -3'
miRNA:   3'- -CGGUGG-CGGCGU--UACCAC-GUU-----------CGAUC- -5'
29104 5' -55.2 NC_006146.1 + 116493 0.69 0.799606
Target:  5'- uCCACCcccagGCCGCAcaugugggcguUGGUGCAGGCcGGu -3'
miRNA:   3'- cGGUGG-----CGGCGUu----------ACCACGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 34242 0.69 0.825945
Target:  5'- --gGCCGCCGCAAggacgccGG-GCcGGCUGGg -3'
miRNA:   3'- cggUGGCGGCGUUa------CCaCGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 63857 0.68 0.866176
Target:  5'- aGCCACuCGCCaCAcgGGUGCcAGUc-- -3'
miRNA:   3'- -CGGUG-GCGGcGUuaCCACGuUCGauc -5'
29104 5' -55.2 NC_006146.1 + 33260 0.66 0.94008
Target:  5'- gGCCGCUGCCccGCuccgGGUGgGggguggcccGGCUGGg -3'
miRNA:   3'- -CGGUGGCGG--CGuua-CCACgU---------UCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 55190 0.7 0.752759
Target:  5'- gGCUGCgGCCGCGGcGG-GCGAGCg-- -3'
miRNA:   3'- -CGGUGgCGGCGUUaCCaCGUUCGauc -5'
29104 5' -55.2 NC_006146.1 + 170102 0.71 0.693095
Target:  5'- gGCCGgCGCCGCAggGGggGCcGGCgGGg -3'
miRNA:   3'- -CGGUgGCGGCGUuaCCa-CGuUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 53041 0.69 0.799606
Target:  5'- gGCCGCCGCCGagaGGUaaGGgggGCGGGUgGGg -3'
miRNA:   3'- -CGGUGGCGGCg--UUA--CCa--CGUUCGaUC- -5'
29104 5' -55.2 NC_006146.1 + 44821 0.69 0.817333
Target:  5'- gGCC-CCGCUGCGGcUGGUGacgGAGgUGGg -3'
miRNA:   3'- -CGGuGGCGGCGUU-ACCACg--UUCgAUC- -5'
29104 5' -55.2 NC_006146.1 + 55960 0.7 0.771886
Target:  5'- cGCCAUCGCCGCccaggGGUaGC-GGUUGGu -3'
miRNA:   3'- -CGGUGGCGGCGuua--CCA-CGuUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 44296 0.69 0.825945
Target:  5'- aCCACCGCCaaacCGGUaGUGgGGGCUGGg -3'
miRNA:   3'- cGGUGGCGGc---GUUAcCACgUUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 42669 0.67 0.887808
Target:  5'- uGCgGCuCGcCCGCGGUGGgcUGCcugAGGCUGGc -3'
miRNA:   3'- -CGgUG-GC-GGCGUUACC--ACG---UUCGAUC- -5'
29104 5' -55.2 NC_006146.1 + 47809 0.69 0.799606
Target:  5'- cCCACCGCCGUcucAUGGgcuCGGGCUGc -3'
miRNA:   3'- cGGUGGCGGCGu--UACCac-GUUCGAUc -5'
29104 5' -55.2 NC_006146.1 + 148422 0.69 0.817333
Target:  5'- uGCCACugaggaaggCGCUGUAugaucUGGUGCAGGCa-- -3'
miRNA:   3'- -CGGUG---------GCGGCGUu----ACCACGUUCGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.