miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 129541 1.11 0.003448
Target:  5'- cCCCACCAGAGGACACGUGUCUCCAACu -3'
miRNA:   3'- -GGGUGGUCUCCUGUGCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 156558 0.82 0.265483
Target:  5'- cCCCACCAGcAGGGCcgcaacggcccuGCGUGaguUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCCUG------------UGCAC---AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 119972 0.79 0.390046
Target:  5'- cCCCACCagcgaggaggaGGAGGAUgAUGUGuUCUCCAACg -3'
miRNA:   3'- -GGGUGG-----------UCUCCUG-UGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 41344 0.77 0.459606
Target:  5'- aCCACCAGGGGguccaguuggagACACGUGUCcucugguggggcaUCCGGCc -3'
miRNA:   3'- gGGUGGUCUCC------------UGUGCACAG-------------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28037 0.76 0.5372
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCAAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28229 0.75 0.567122
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCGAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 155581 0.74 0.60762
Target:  5'- gCCCGCCAGGGGcACAcCGgggcugGcCUCCGGCc -3'
miRNA:   3'- -GGGUGGUCUCC-UGU-GCa-----CaGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 42637 0.74 0.60762
Target:  5'- gCCaCGCCAGcGGcCGCGUGUacugCUCCAACu -3'
miRNA:   3'- -GG-GUGGUCuCCuGUGCACA----GAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 20431 0.74 0.60762
Target:  5'- gCUACCAGGGGGcCAC-UGUCaUCCAGCc -3'
miRNA:   3'- gGGUGGUCUCCU-GUGcACAG-AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 64379 0.73 0.658588
Target:  5'- gCCCACCAGGGGAUGCGcccaccUGUCU--GACu -3'
miRNA:   3'- -GGGUGGUCUCCUGUGC------ACAGAggUUG- -5'
29105 3' -54.4 NC_006146.1 + 126676 0.73 0.66875
Target:  5'- cCCgGCCAGAGGAgACG-GUCaCCAAg -3'
miRNA:   3'- -GGgUGGUCUCCUgUGCaCAGaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 14813 0.72 0.718947
Target:  5'- gCCgGCCgggccggaGGAGGGCACG-GUCUCgGGCc -3'
miRNA:   3'- -GGgUGG--------UCUCCUGUGCaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 165808 0.71 0.794942
Target:  5'- gCCgGCUAGGGGGgcgucccuggcCGCGUGgacgcCUCCAACg -3'
miRNA:   3'- -GGgUGGUCUCCU-----------GUGCACa----GAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 64647 0.7 0.835532
Target:  5'- uUCCGCCGGggccaGGGGCACGUcgccgugguaggugGUCUCCu-- -3'
miRNA:   3'- -GGGUGGUC-----UCCUGUGCA--------------CAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 40079 0.7 0.853186
Target:  5'- uCCCGgCGGAGGGCcugcagcGCGUG-CUgCAGCu -3'
miRNA:   3'- -GGGUgGUCUCCUG-------UGCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 157039 0.69 0.861657
Target:  5'- uCCCGCUGGAGG-CAauggucgccaGUGUUUCCAGg -3'
miRNA:   3'- -GGGUGGUCUCCuGUg---------CACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 168269 0.69 0.861657
Target:  5'- cCCCGCCGuGuGGACGaagcCGUG-CUCCAGa -3'
miRNA:   3'- -GGGUGGU-CuCCUGU----GCACaGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 114127 0.69 0.869141
Target:  5'- gCUCACCgaGGAGGccuGCGCGUG-CUCCGc- -3'
miRNA:   3'- -GGGUGG--UCUCC---UGUGCACaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 115774 0.69 0.883471
Target:  5'- cCCCACCGGAGGccgaguacgaGCAgGUGg--CCAGg -3'
miRNA:   3'- -GGGUGGUCUCC----------UGUgCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 57131 0.69 0.883471
Target:  5'- uCCCuaauuUCGGGGGGCugGUGg--CCGACc -3'
miRNA:   3'- -GGGu----GGUCUCCUGugCACagaGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.