miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 516 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 1447 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 2379 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 3311 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 8512 0.67 0.9432
Target:  5'- gCCCACCGGGgucccGGGCGCGggcGcgccaaggggcuccaUCUCCAAg -3'
miRNA:   3'- -GGGUGGUCU-----CCUGUGCa--C---------------AGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 14679 0.68 0.926476
Target:  5'- aCgGCCgAGGGGGCcCGcGUCUCCuGCa -3'
miRNA:   3'- gGgUGG-UCUCCUGuGCaCAGAGGuUG- -5'
29105 3' -54.4 NC_006146.1 + 14813 0.72 0.718947
Target:  5'- gCCgGCCgggccggaGGAGGGCACG-GUCUCgGGCc -3'
miRNA:   3'- -GGgUGG--------UCUCCUGUGCaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 14912 0.68 0.909444
Target:  5'- gCCC-CCGGAGGugGCGgagcUCUCgGAg -3'
miRNA:   3'- -GGGuGGUCUCCugUGCac--AGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 20431 0.74 0.60762
Target:  5'- gCUACCAGGGGGcCAC-UGUCaUCCAGCc -3'
miRNA:   3'- gGGUGGUCUCCU-GUGcACAG-AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 23419 0.65 0.970734
Target:  5'- aCCUGCCGGAGGGgcaguacCACaag-CUCCGGCu -3'
miRNA:   3'- -GGGUGGUCUCCU-------GUGcacaGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 23519 0.68 0.926476
Target:  5'- gCCCGCCGuGAacucgGGACuccCGUGUCUggcggccgCCGACa -3'
miRNA:   3'- -GGGUGGU-CU-----CCUGu--GCACAGA--------GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28037 0.76 0.5372
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCAAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28229 0.75 0.567122
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCGAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 40079 0.7 0.853186
Target:  5'- uCCCGgCGGAGGGCcugcagcGCGUG-CUgCAGCu -3'
miRNA:   3'- -GGGUgGUCUCCUG-------UGCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 40775 0.67 0.945869
Target:  5'- uCCCGCCuGAGGGucucCACGcgGUUUCUGAg -3'
miRNA:   3'- -GGGUGGuCUCCU----GUGCa-CAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 41344 0.77 0.459606
Target:  5'- aCCACCAGGGGguccaguuggagACACGUGUCcucugguggggcaUCCGGCc -3'
miRNA:   3'- gGGUGGUCUCC------------UGUGCACAG-------------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 42637 0.74 0.60762
Target:  5'- gCCaCGCCAGcGGcCGCGUGUacugCUCCAACu -3'
miRNA:   3'- -GG-GUGGUCuCCuGUGCACA----GAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 44381 0.67 0.931679
Target:  5'- cCCCGcCCGGGGGGCGUGUGgggCCGGg -3'
miRNA:   3'- -GGGU-GGUCUCCUGUGCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 46926 0.67 0.941374
Target:  5'- gUCGCaCGG-GGACuCG-GUCUCCAGCc -3'
miRNA:   3'- gGGUG-GUCuCCUGuGCaCAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 50130 0.68 0.903296
Target:  5'- cUCCGCCAG-GGACAUGaggCgccgCCAGCg -3'
miRNA:   3'- -GGGUGGUCuCCUGUGCacaGa---GGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.