miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 109194 0.68 0.925943
Target:  5'- gCCCAgaCAGAGGGCuggacugGCGgcgGUCcCCAACc -3'
miRNA:   3'- -GGGUg-GUCUCCUG-------UGCa--CAGaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 129541 1.11 0.003448
Target:  5'- cCCCACCAGAGGACACGUGUCUCCAACu -3'
miRNA:   3'- -GGGUGGUCUCCUGUGCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 156558 0.82 0.265483
Target:  5'- cCCCACCAGcAGGGCcgcaacggcccuGCGUGaguUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCCUG------------UGCAC---AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 50735 0.68 0.903296
Target:  5'- gCCCGgUcGGGG-UACGUGUgUCCGGCa -3'
miRNA:   3'- -GGGUgGuCUCCuGUGCACAgAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 168578 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5'
29105 3' -54.4 NC_006146.1 + 42637 0.74 0.60762
Target:  5'- gCCaCGCCAGcGGcCGCGUGUacugCUCCAACu -3'
miRNA:   3'- -GG-GUGGUCuCCuGUGCACA----GAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 57131 0.69 0.883471
Target:  5'- uCCCuaauuUCGGGGGGCugGUGg--CCGACc -3'
miRNA:   3'- -GGGu----GGUCUCCUGugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 50130 0.68 0.903296
Target:  5'- cUCCGCCAG-GGACAUGaggCgccgCCAGCg -3'
miRNA:   3'- -GGGUGGUCuCCUGUGCacaGa---GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 128039 0.68 0.909444
Target:  5'- uCCCACCAGuGGaaccuGCGCGUGgg-CCuGGCg -3'
miRNA:   3'- -GGGUGGUCuCC-----UGUGCACagaGG-UUG- -5'
29105 3' -54.4 NC_006146.1 + 117673 0.67 0.936645
Target:  5'- cUCCACCGGuAGcuGCuGCGUGggauUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCc-UG-UGCAC----AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 127489 0.66 0.968073
Target:  5'- -aCGCCAuGcAGcGGCGCGUGUUUCCcaAGCa -3'
miRNA:   3'- ggGUGGU-C-UC-CUGUGCACAGAGG--UUG- -5'
29105 3' -54.4 NC_006146.1 + 64647 0.7 0.835532
Target:  5'- uUCCGCCGGggccaGGGGCACGUcgccgugguaggugGUCUCCu-- -3'
miRNA:   3'- -GGGUGGUC-----UCCUGUGCA--------------CAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 155581 0.74 0.60762
Target:  5'- gCCCGCCAGGGGcACAcCGgggcugGcCUCCGGCc -3'
miRNA:   3'- -GGGUGGUCUCC-UGU-GCa-----CaGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 170441 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5'
29105 3' -54.4 NC_006146.1 + 126395 0.68 0.909444
Target:  5'- uCCCACCAGGGGccucuGCGCcc-UCUCCGcgaACg -3'
miRNA:   3'- -GGGUGGUCUCC-----UGUGcacAGAGGU---UG- -5'
29105 3' -54.4 NC_006146.1 + 157039 0.69 0.861657
Target:  5'- uCCCGCUGGAGG-CAauggucgccaGUGUUUCCAGg -3'
miRNA:   3'- -GGGUGGUCUCCuGUg---------CACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 44381 0.67 0.931679
Target:  5'- cCCCGcCCGGGGGGCGUGUGgggCCGGg -3'
miRNA:   3'- -GGGU-GGUCUCCUGUGCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 153088 0.67 0.941374
Target:  5'- -aCACCAGGGGGCGCGaguagcacaUGcUCUCgGAg -3'
miRNA:   3'- ggGUGGUCUCCUGUGC---------AC-AGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 107160 0.68 0.896916
Target:  5'- gCCCACCAGAa-ACACGUcGcCUCCGc- -3'
miRNA:   3'- -GGGUGGUCUccUGUGCA-CaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 169510 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.