miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 50735 0.68 0.903296
Target:  5'- gCCCGgUcGGGG-UACGUGUgUCCGGCa -3'
miRNA:   3'- -GGGUgGuCUCCuGUGCACAgAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 57131 0.69 0.883471
Target:  5'- uCCCuaauuUCGGGGGGCugGUGg--CCGACc -3'
miRNA:   3'- -GGGu----GGUCUCCUGugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 59775 0.66 0.961553
Target:  5'- gCCACCuGGGGGuugaGgGUGUCgacCCGGCa -3'
miRNA:   3'- gGGUGGuCUCCUg---UgCACAGa--GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 64379 0.73 0.658588
Target:  5'- gCCCACCAGGGGAUGCGcccaccUGUCU--GACu -3'
miRNA:   3'- -GGGUGGUCUCCUGUGC------ACAGAggUUG- -5'
29105 3' -54.4 NC_006146.1 + 64647 0.7 0.835532
Target:  5'- uUCCGCCGGggccaGGGGCACGUcgccgugguaggugGUCUCCu-- -3'
miRNA:   3'- -GGGUGGUC-----UCCUGUGCA--------------CAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 70246 0.67 0.950131
Target:  5'- uCCUACCAGuguaacgcGGACACGUucUCUCCc-- -3'
miRNA:   3'- -GGGUGGUCu-------CCUGUGCAc-AGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 70697 0.67 0.950131
Target:  5'- gCCACgGGccGcCugGUGUCUCUGGCg -3'
miRNA:   3'- gGGUGgUCucCuGugCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 75725 0.68 0.926476
Target:  5'- cCUgGCCaAGuacuGGAC-CGUGcUCUCCGACa -3'
miRNA:   3'- -GGgUGG-UCu---CCUGuGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 75777 0.66 0.964919
Target:  5'- aCCAagcCCAGGGGGCucuacuCGggcGUCUCgGGCg -3'
miRNA:   3'- gGGU---GGUCUCCUGu-----GCa--CAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 85248 0.66 0.957969
Target:  5'- aUCCACCAGGGucCcCGUGgg-CCAACc -3'
miRNA:   3'- -GGGUGGUCUCcuGuGCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 92075 0.66 0.961553
Target:  5'- uCCC-CCGGAucacggcugccuGGACGCGUGggcCUCCc-- -3'
miRNA:   3'- -GGGuGGUCU------------CCUGUGCACa--GAGGuug -5'
29105 3' -54.4 NC_006146.1 + 102352 0.66 0.968073
Target:  5'- gCUCGCCAGcgguccGGGCACucaaagGUCUCCGGg -3'
miRNA:   3'- -GGGUGGUCu-----CCUGUGca----CAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 103398 0.67 0.950131
Target:  5'- gCCUGCCAGuggGGGGCGuCGUG-CUCCc-- -3'
miRNA:   3'- -GGGUGGUC---UCCUGU-GCACaGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 105263 0.67 0.931679
Target:  5'- uCCCACCAGAgagccgcauccuGGAacuCGaagagGUCUCUGACg -3'
miRNA:   3'- -GGGUGGUCU------------CCUgu-GCa----CAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 107160 0.68 0.896916
Target:  5'- gCCCACCAGAa-ACACGUcGcCUCCGc- -3'
miRNA:   3'- -GGGUGGUCUccUGUGCA-CaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 109194 0.68 0.925943
Target:  5'- gCCCAgaCAGAGGGCuggacugGCGgcgGUCcCCAACc -3'
miRNA:   3'- -GGGUg-GUCUCCUG-------UGCa--CAGaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 110856 0.68 0.915358
Target:  5'- gCCCgAUCAGAgGGACGCuGcGUCUCgGGCu -3'
miRNA:   3'- -GGG-UGGUCU-CCUGUG-CaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 111586 0.66 0.963932
Target:  5'- aCCGCCAGccucucggccagccAGGuCAcCGUGUCcaacaccaUCCAGCu -3'
miRNA:   3'- gGGUGGUC--------------UCCuGU-GCACAG--------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 114127 0.69 0.869141
Target:  5'- gCUCACCgaGGAGGccuGCGCGUG-CUCCGc- -3'
miRNA:   3'- -GGGUGG--UCUCC---UGUGCACaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 114793 0.67 0.945869
Target:  5'- gCCACCuucgccuucguGGAGGAgCugGUGg--CCGACa -3'
miRNA:   3'- gGGUGG-----------UCUCCU-GugCACagaGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.