miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 142694 0.68 0.926476
Target:  5'- gCCGCCGGAGGGCucuaACccGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUG----UGcaCAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 135706 0.67 0.936645
Target:  5'- uCCCuCCcuGGGACGCGgUGUUUCUAAa -3'
miRNA:   3'- -GGGuGGucUCCUGUGC-ACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 129626 0.68 0.903296
Target:  5'- gUCGCCGGGuccuccgcGGGCGCGUG-CUCCGc- -3'
miRNA:   3'- gGGUGGUCU--------CCUGUGCACaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 129541 1.11 0.003448
Target:  5'- cCCCACCAGAGGACACGUGUCUCCAACu -3'
miRNA:   3'- -GGGUGGUCUCCUGUGCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 128039 0.68 0.909444
Target:  5'- uCCCACCAGuGGaaccuGCGCGUGgg-CCuGGCg -3'
miRNA:   3'- -GGGUGGUCuCC-----UGUGCACagaGG-UUG- -5'
29105 3' -54.4 NC_006146.1 + 127489 0.66 0.968073
Target:  5'- -aCGCCAuGcAGcGGCGCGUGUUUCCcaAGCa -3'
miRNA:   3'- ggGUGGU-C-UC-CUGUGCACAGAGG--UUG- -5'
29105 3' -54.4 NC_006146.1 + 126676 0.73 0.66875
Target:  5'- cCCgGCCAGAGGAgACG-GUCaCCAAg -3'
miRNA:   3'- -GGgUGGUCUCCUgUGCaCAGaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 126395 0.68 0.909444
Target:  5'- uCCCACCAGGGGccucuGCGCcc-UCUCCGcgaACg -3'
miRNA:   3'- -GGGUGGUCUCC-----UGUGcacAGAGGU---UG- -5'
29105 3' -54.4 NC_006146.1 + 123651 0.65 0.970447
Target:  5'- aCCCggGCCAGGGGcCACGUcgacccgcgCCAGCu -3'
miRNA:   3'- -GGG--UGGUCUCCuGUGCAcaga-----GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 119972 0.79 0.390046
Target:  5'- cCCCACCagcgaggaggaGGAGGAUgAUGUGuUCUCCAACg -3'
miRNA:   3'- -GGGUGG-----------UCUCCUG-UGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 117673 0.67 0.936645
Target:  5'- cUCCACCGGuAGcuGCuGCGUGggauUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCc-UG-UGCAC----AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 115774 0.69 0.883471
Target:  5'- cCCCACCGGAGGccgaguacgaGCAgGUGg--CCAGg -3'
miRNA:   3'- -GGGUGGUCUCC----------UGUgCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 114793 0.67 0.945869
Target:  5'- gCCACCuucgccuucguGGAGGAgCugGUGg--CCGACa -3'
miRNA:   3'- gGGUGG-----------UCUCCU-GugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 114127 0.69 0.869141
Target:  5'- gCUCACCgaGGAGGccuGCGCGUG-CUCCGc- -3'
miRNA:   3'- -GGGUGG--UCUCC---UGUGCACaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 111586 0.66 0.963932
Target:  5'- aCCGCCAGccucucggccagccAGGuCAcCGUGUCcaacaccaUCCAGCu -3'
miRNA:   3'- gGGUGGUC--------------UCCuGU-GCACAG--------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 110856 0.68 0.915358
Target:  5'- gCCCgAUCAGAgGGACGCuGcGUCUCgGGCu -3'
miRNA:   3'- -GGG-UGGUCU-CCUGUG-CaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 109194 0.68 0.925943
Target:  5'- gCCCAgaCAGAGGGCuggacugGCGgcgGUCcCCAACc -3'
miRNA:   3'- -GGGUg-GUCUCCUG-------UGCa--CAGaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 107160 0.68 0.896916
Target:  5'- gCCCACCAGAa-ACACGUcGcCUCCGc- -3'
miRNA:   3'- -GGGUGGUCUccUGUGCA-CaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 105263 0.67 0.931679
Target:  5'- uCCCACCAGAgagccgcauccuGGAacuCGaagagGUCUCUGACg -3'
miRNA:   3'- -GGGUGGUCU------------CCUgu-GCa----CAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 103398 0.67 0.950131
Target:  5'- gCCUGCCAGuggGGGGCGuCGUG-CUCCc-- -3'
miRNA:   3'- -GGGUGGUC---UCCUGU-GCACaGAGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.