miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 151598 0.66 0.954163
Target:  5'- gCCCAUgaUGGAGcGGCGCGUGacccgCUCCAc- -3'
miRNA:   3'- -GGGUG--GUCUC-CUGUGCACa----GAGGUug -5'
29105 3' -54.4 NC_006146.1 + 70246 0.67 0.950131
Target:  5'- uCCUACCAGuguaacgcGGACACGUucUCUCCc-- -3'
miRNA:   3'- -GGGUGGUCu-------CCUGUGCAc-AGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 70697 0.67 0.950131
Target:  5'- gCCACgGGccGcCugGUGUCUCUGGCg -3'
miRNA:   3'- gGGUGgUCucCuGugCACAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 169768 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 168836 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 167904 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 46926 0.67 0.941374
Target:  5'- gUCGCaCGG-GGACuCG-GUCUCCAGCc -3'
miRNA:   3'- gGGUG-GUCuCCUGuGCaCAGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 153088 0.67 0.941374
Target:  5'- -aCACCAGGGGGCGCGaguagcacaUGcUCUCgGAg -3'
miRNA:   3'- ggGUGGUCUCCUGUGC---------AC-AGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 117673 0.67 0.936645
Target:  5'- cUCCACCGGuAGcuGCuGCGUGggauUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCc-UG-UGCAC----AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 44381 0.67 0.931679
Target:  5'- cCCCGcCCGGGGGGCGUGUGgggCCGGg -3'
miRNA:   3'- -GGGU-GGUCUCCUGUGCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 109194 0.68 0.925943
Target:  5'- gCCCAgaCAGAGGGCuggacugGCGgcgGUCcCCAACc -3'
miRNA:   3'- -GGGUg-GUCUCCUG-------UGCa--CAGaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 20431 0.74 0.60762
Target:  5'- gCUACCAGGGGGcCAC-UGUCaUCCAGCc -3'
miRNA:   3'- gGGUGGUCUCCU-GUGcACAG-AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 119972 0.79 0.390046
Target:  5'- cCCCACCagcgaggaggaGGAGGAUgAUGUGuUCUCCAACg -3'
miRNA:   3'- -GGGUGG-----------UCUCCUG-UGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 41344 0.77 0.459606
Target:  5'- aCCACCAGGGGguccaguuggagACACGUGUCcucugguggggcaUCCGGCc -3'
miRNA:   3'- gGGUGGUCUCC------------UGUGCACAG-------------AGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28037 0.76 0.5372
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCAAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 28229 0.75 0.567122
Target:  5'- aCCCAgCCGGAGGGCAgGUGgCUgCGAUa -3'
miRNA:   3'- -GGGU-GGUCUCCUGUgCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 516 0.66 0.957969
Target:  5'- gCCC-CCAGGGGAgGCccgGcCUCCAcACa -3'
miRNA:   3'- -GGGuGGUCUCCUgUGca-CaGAGGU-UG- -5'
29105 3' -54.4 NC_006146.1 + 23519 0.68 0.926476
Target:  5'- gCCCGCCGuGAacucgGGACuccCGUGUCUggcggccgCCGACa -3'
miRNA:   3'- -GGGUGGU-CU-----CCUGu--GCACAGA--------GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 75725 0.68 0.926476
Target:  5'- cCUgGCCaAGuacuGGAC-CGUGcUCUCCGACa -3'
miRNA:   3'- -GGgUGG-UCu---CCUGuGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 105263 0.67 0.931679
Target:  5'- uCCCACCAGAgagccgcauccuGGAacuCGaagagGUCUCUGACg -3'
miRNA:   3'- -GGGUGGUCU------------CCUgu-GCa----CAGAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.