miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 148849 0.68 0.903296
Target:  5'- gCCGCCGGAGGGCucuaacCcUGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUGu-----GcACAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 151927 0.68 0.903296
Target:  5'- gCCGCCGGAGGGCucuaacCcUGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUGu-----GcACAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 155005 0.68 0.903296
Target:  5'- gCCGCCGGAGGGCucuaacCcUGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUGu-----GcACAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 158084 0.68 0.903296
Target:  5'- gCCGCCGGAGGGCucuaacCcUGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUGu-----GcACAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 14912 0.68 0.909444
Target:  5'- gCCC-CCGGAGGugGCGgagcUCUCgGAg -3'
miRNA:   3'- -GGGuGGUCUCCugUGCac--AGAGgUUg -5'
29105 3' -54.4 NC_006146.1 + 110856 0.68 0.915358
Target:  5'- gCCCgAUCAGAgGGACGCuGcGUCUCgGGCu -3'
miRNA:   3'- -GGG-UGGUCU-CCUGUG-CaCAGAGgUUG- -5'
29105 3' -54.4 NC_006146.1 + 14679 0.68 0.926476
Target:  5'- aCgGCCgAGGGGGCcCGcGUCUCCuGCa -3'
miRNA:   3'- gGgUGG-UCUCCUGuGCaCAGAGGuUG- -5'
29105 3' -54.4 NC_006146.1 + 142694 0.68 0.926476
Target:  5'- gCCGCCGGAGGGCucuaACccGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUG----UGcaCAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 23519 0.68 0.926476
Target:  5'- gCCCGCCGuGAacucgGGACuccCGUGUCUggcggccgCCGACa -3'
miRNA:   3'- -GGGUGGU-CU-----CCUGu--GCACAGA--------GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 75725 0.68 0.926476
Target:  5'- cCUgGCCaAGuacuGGAC-CGUGcUCUCCGACa -3'
miRNA:   3'- -GGgUGG-UCu---CCUGuGCAC-AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 50130 0.68 0.903296
Target:  5'- cUCCGCCAG-GGACAUGaggCgccgCCAGCg -3'
miRNA:   3'- -GGGUGGUCuCCUGUGCacaGa---GGUUG- -5'
29105 3' -54.4 NC_006146.1 + 107160 0.68 0.896916
Target:  5'- gCCCACCAGAa-ACACGUcGcCUCCGc- -3'
miRNA:   3'- -GGGUGGUCUccUGUGCA-CaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 168269 0.69 0.861657
Target:  5'- cCCCGCCGuGuGGACGaagcCGUG-CUCCAGa -3'
miRNA:   3'- -GGGUGGU-CuCCUGU----GCACaGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 114127 0.69 0.869141
Target:  5'- gCUCACCgaGGAGGccuGCGCGUG-CUCCGc- -3'
miRNA:   3'- -GGGUGG--UCUCC---UGUGCACaGAGGUug -5'
29105 3' -54.4 NC_006146.1 + 115774 0.69 0.883471
Target:  5'- cCCCACCGGAGGccgaguacgaGCAgGUGg--CCAGg -3'
miRNA:   3'- -GGGUGGUCUCC----------UGUgCACagaGGUUg -5'
29105 3' -54.4 NC_006146.1 + 57131 0.69 0.883471
Target:  5'- uCCCuaauuUCGGGGGGCugGUGg--CCGACc -3'
miRNA:   3'- -GGGu----GGUCUCCUGugCACagaGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 157039 0.69 0.861657
Target:  5'- uCCCGCUGGAGG-CAauggucgccaGUGUUUCCAGg -3'
miRNA:   3'- -GGGUGGUCUCCuGUg---------CACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 64647 0.7 0.835532
Target:  5'- uUCCGCCGGggccaGGGGCACGUcgccgugguaggugGUCUCCu-- -3'
miRNA:   3'- -GGGUGGUC-----UCCUGUGCA--------------CAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 40079 0.7 0.853186
Target:  5'- uCCCGgCGGAGGGCcugcagcGCGUG-CUgCAGCu -3'
miRNA:   3'- -GGGUgGUCUCCUG-------UGCACaGAgGUUG- -5'
29105 3' -54.4 NC_006146.1 + 165808 0.71 0.794942
Target:  5'- gCCgGCUAGGGGGgcgucccuggcCGCGUGgacgcCUCCAACg -3'
miRNA:   3'- -GGgUGGUCUCCU-----------GUGCACa----GAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.