miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 3' -54.4 NC_006146.1 + 156001 0.66 0.957969
Target:  5'- gCCACCuccGGGGGCACG-GUCgagaaGACg -3'
miRNA:   3'- gGGUGGu--CUCCUGUGCaCAGagg--UUG- -5'
29105 3' -54.4 NC_006146.1 + 156558 0.82 0.265483
Target:  5'- cCCCACCAGcAGGGCcgcaacggcccuGCGUGaguUCUCCAGCa -3'
miRNA:   3'- -GGGUGGUC-UCCUG------------UGCAC---AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 157039 0.69 0.861657
Target:  5'- uCCCGCUGGAGG-CAauggucgccaGUGUUUCCAGg -3'
miRNA:   3'- -GGGUGGUCUCCuGUg---------CACAGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 158084 0.68 0.903296
Target:  5'- gCCGCCGGAGGGCucuaacCcUGUCUCUg-- -3'
miRNA:   3'- gGGUGGUCUCCUGu-----GcACAGAGGuug -5'
29105 3' -54.4 NC_006146.1 + 165808 0.71 0.794942
Target:  5'- gCCgGCUAGGGGGgcgucccuggcCGCGUGgacgcCUCCAACg -3'
miRNA:   3'- -GGgUGGUCUCCU-----------GUGCACa----GAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 167904 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 168269 0.69 0.861657
Target:  5'- cCCCGCCGuGuGGACGaagcCGUG-CUCCAGa -3'
miRNA:   3'- -GGGUGGU-CuCCUGU----GCACaGAGGUUg -5'
29105 3' -54.4 NC_006146.1 + 168578 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5'
29105 3' -54.4 NC_006146.1 + 168836 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 169510 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5'
29105 3' -54.4 NC_006146.1 + 169768 0.67 0.945869
Target:  5'- aCCCuCgCGGGGGcaccgGCGCGUGgagaagacccuUCUCCGACc -3'
miRNA:   3'- -GGGuG-GUCUCC-----UGUGCAC-----------AGAGGUUG- -5'
29105 3' -54.4 NC_006146.1 + 170441 0.68 0.90884
Target:  5'- gCCCggcgcguGCCGGGGGACccggggGCGUGUC-CCGc- -3'
miRNA:   3'- -GGG-------UGGUCUCCUG------UGCACAGaGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.