miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29105 5' -56.5 NC_006146.1 + 60480 0.66 0.890492
Target:  5'- -cGGUGAgaggccgGGGGGcCAGCUCCC-CcGAc -3'
miRNA:   3'- caCCACU-------UCCCU-GUCGAGGGaGaCUu -5'
29105 5' -56.5 NC_006146.1 + 167731 0.66 0.882168
Target:  5'- gGUGGggccUGAGGGGGCgcGGCgauugucgccgcccUCCCUCUGc- -3'
miRNA:   3'- -CACC----ACUUCCCUG--UCG--------------AGGGAGACuu -5'
29105 5' -56.5 NC_006146.1 + 169596 0.66 0.882168
Target:  5'- gGUGGggccUGAGGGGGCgcGGCgauugucgccgcccUCCCUCUGc- -3'
miRNA:   3'- -CACC----ACUUCCCUG--UCG--------------AGGGAGACuu -5'
29105 5' -56.5 NC_006146.1 + 168663 0.66 0.882168
Target:  5'- gGUGGggccUGAGGGGGCgcGGCgauugucgccgcccUCCCUCUGc- -3'
miRNA:   3'- -CACC----ACUUCCCUG--UCG--------------AGGGAGACuu -5'
29105 5' -56.5 NC_006146.1 + 61437 0.66 0.877162
Target:  5'- aGUGGUGGAcucguGGGGgAGCUCCagCUCUa-- -3'
miRNA:   3'- -CACCACUU-----CCCUgUCGAGG--GAGAcuu -5'
29105 5' -56.5 NC_006146.1 + 99079 0.66 0.877162
Target:  5'- aGUGGUGGAGGGcccGCAGCcagguccgcacgUCCCgcgcCUGc- -3'
miRNA:   3'- -CACCACUUCCC---UGUCG------------AGGGa---GACuu -5'
29105 5' -56.5 NC_006146.1 + 52341 0.66 0.869821
Target:  5'- -gGGUGcccGGGGCGGCgUCCUUUUGGc -3'
miRNA:   3'- caCCACuu-CCCUGUCG-AGGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 86443 0.66 0.862262
Target:  5'- cUGGgcuUGAAGGGGCAGCUgggCUUUGAGg -3'
miRNA:   3'- cACC---ACUUCCCUGUCGAgg-GAGACUU- -5'
29105 5' -56.5 NC_006146.1 + 162628 0.67 0.821436
Target:  5'- -cGGUGggGGuaacGGCAcGCUCCCUCc--- -3'
miRNA:   3'- caCCACuuCC----CUGU-CGAGGGAGacuu -5'
29105 5' -56.5 NC_006146.1 + 120366 0.67 0.803825
Target:  5'- cGUGGUGAAGGaGACGGCguucaCCgUCa--- -3'
miRNA:   3'- -CACCACUUCC-CUGUCGa----GGgAGacuu -5'
29105 5' -56.5 NC_006146.1 + 92775 0.68 0.794778
Target:  5'- -aGGUGAAGGGGCcucugccucucaGGCUUCC-CUGu- -3'
miRNA:   3'- caCCACUUCCCUG------------UCGAGGGaGACuu -5'
29105 5' -56.5 NC_006146.1 + 157539 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 142149 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 145227 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 148305 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 151383 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 154461 0.68 0.757187
Target:  5'- cUGGgccccGAGGG-CGGCUcCCCUCUGAc -3'
miRNA:   3'- cACCac---UUCCCuGUCGA-GGGAGACUu -5'
29105 5' -56.5 NC_006146.1 + 153247 0.69 0.727779
Target:  5'- -cGGUGguGGGAuugaucuugguCAGCUCCCUCa--- -3'
miRNA:   3'- caCCACuuCCCU-----------GUCGAGGGAGacuu -5'
29105 5' -56.5 NC_006146.1 + 126035 0.7 0.646344
Target:  5'- cUGGgccgGGAGGGACugGGCUCCCUUgGGu -3'
miRNA:   3'- cACCa---CUUCCCUG--UCGAGGGAGaCUu -5'
29105 5' -56.5 NC_006146.1 + 57675 0.71 0.625695
Target:  5'- gGUGGUGGAGauuGACAGCUUuuacucagacgCCUCUGAc -3'
miRNA:   3'- -CACCACUUCc--CUGUCGAG-----------GGAGACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.