miRNA display CGI


Results 61 - 80 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 118748 0.74 0.484818
Target:  5'- cGCaggaCACgGCCAagccGUCUCCAGGAAUCGa -3'
miRNA:   3'- -CGg---GUGgUGGU----CAGAGGUCCUUGGCc -5'
29106 5' -57.6 NC_006146.1 + 49695 0.72 0.551218
Target:  5'- cGUCCuccuCCACCc-UCUCCAGGGGCCa- -3'
miRNA:   3'- -CGGGu---GGUGGucAGAGGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 68505 0.75 0.405571
Target:  5'- cGCCCcagggacagauACCACCAG-CUCCccgAGGAcCCGGa -3'
miRNA:   3'- -CGGG-----------UGGUGGUCaGAGG---UCCUuGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135159 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135531 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 135902 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136367 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 136646 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137017 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137296 0.75 0.436311
Target:  5'- gGUCCGCUGcCCGGUCcuggagcucggggCCGGGGGCCGGg -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 137789 0.69 0.737704
Target:  5'- gGCCUgguCCGCCGGauccgCUUCGGGGguccGCCGGu -3'
miRNA:   3'- -CGGGu--GGUGGUCa----GAGGUCCU----UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 129888 0.69 0.736756
Target:  5'- uGCCCuucuucgACCACguGUCUCUcugcgcccugGGGcGCCGGc -3'
miRNA:   3'- -CGGG-------UGGUGguCAGAGG----------UCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 2921 0.71 0.630054
Target:  5'- cGCCCACCAU--GUUUaCCGGGgAGCUGGg -3'
miRNA:   3'- -CGGGUGGUGguCAGA-GGUCC-UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 19713 0.71 0.630054
Target:  5'- cGCCCGCCcgGCCAGagacUCUCCcucgcggacAGGGGCCu- -3'
miRNA:   3'- -CGGGUGG--UGGUC----AGAGG---------UCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 48342 0.71 0.649912
Target:  5'- gGCCagGCguCCAGUCUggCCAGcGGGCCGGc -3'
miRNA:   3'- -CGGg-UGguGGUCAGA--GGUC-CUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 167240 0.7 0.669718
Target:  5'- uCCCGCgGCCAGUCccuggaugUCgGGGAGggcCCGGg -3'
miRNA:   3'- cGGGUGgUGGUCAG--------AGgUCCUU---GGCC- -5'
29106 5' -57.6 NC_006146.1 + 33182 0.7 0.669718
Target:  5'- cGCgCCGCCGCuCGGUC-CUGGGccuCCGGg -3'
miRNA:   3'- -CG-GGUGGUG-GUCAGaGGUCCuu-GGCC- -5'
29106 5' -57.6 NC_006146.1 + 98454 0.7 0.69919
Target:  5'- gGCgCCGCCcggggGCCAGUCUCUGGGucaguCCGcGg -3'
miRNA:   3'- -CG-GGUGG-----UGGUCAGAGGUCCuu---GGC-C- -5'
29106 5' -57.6 NC_006146.1 + 20456 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5'
29106 5' -57.6 NC_006146.1 + 29690 0.7 0.708919
Target:  5'- uGUCCACUGcCCAGUUccccCCAGGAGCCc- -3'
miRNA:   3'- -CGGGUGGU-GGUCAGa---GGUCCUUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.