miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 151885 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 154963 0.66 0.899391
Target:  5'- uGCCCAgCCAcCCAGcCUcgcCCAGGcGCCu- -3'
miRNA:   3'- -CGGGU-GGU-GGUCaGA---GGUCCuUGGcc -5'
29106 5' -57.6 NC_006146.1 + 8919 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 8985 0.66 0.899391
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCg-- -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 76373 0.66 0.899391
Target:  5'- -aCCGCCACgAGagggCgcgCCGGGGgagggACCGGg -3'
miRNA:   3'- cgGGUGGUGgUCa---Ga--GGUCCU-----UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 69743 0.66 0.889133
Target:  5'- aGCCCagguaaagguuggagACCACCGG-CUUCAGGuaaaaGACCa- -3'
miRNA:   3'- -CGGG---------------UGGUGGUCaGAGGUCC-----UUGGcc -5'
29106 5' -57.6 NC_006146.1 + 136886 0.66 0.887148
Target:  5'- cGCCCGCCugCcccgacccccccccuGcCuUCCAGGugcACCGGa -3'
miRNA:   3'- -CGGGUGGugGu--------------CaG-AGGUCCu--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 166722 0.67 0.865542
Target:  5'- uCCCGCCgaGCCcGUCUCggggCAGGAgGCCGa -3'
miRNA:   3'- cGGGUGG--UGGuCAGAG----GUCCU-UGGCc -5'
29106 5' -57.6 NC_006146.1 + 103576 0.67 0.868439
Target:  5'- cGCCCggGCCuggGCCGGgCUcagcgcggacguggcCCGGGAGCUGGc -3'
miRNA:   3'- -CGGG--UGG---UGGUCaGA---------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 99066 0.66 0.872017
Target:  5'- aCCCACCACaguGGUCUCCGgcucuacaucaguGGcAACCa- -3'
miRNA:   3'- cGGGUGGUGg--UCAGAGGU-------------CC-UUGGcc -5'
29106 5' -57.6 NC_006146.1 + 45661 0.66 0.872726
Target:  5'- aGUCCGgCGCCAGgccaguggCUCCccuGGAuuGCUGGa -3'
miRNA:   3'- -CGGGUgGUGGUCa-------GAGGu--CCU--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 85373 0.66 0.872726
Target:  5'- uGCCCGguggagaCGCCAGaagCCGGG-ACCGGc -3'
miRNA:   3'- -CGGGUg------GUGGUCagaGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 24237 0.66 0.879019
Target:  5'- cGCCCACCGCCcgggaggguuGUUUucugaccauggacCCAGGccucgugacccuGGCCGGg -3'
miRNA:   3'- -CGGGUGGUGGu---------CAGA-------------GGUCC------------UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 123905 0.66 0.879019
Target:  5'- gGgCCGCUGCCGGUCcgacgggcgcaauUCCuGGcggcGGCCGGg -3'
miRNA:   3'- -CgGGUGGUGGUCAG-------------AGGuCC----UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 8511 0.66 0.879708
Target:  5'- gGCCCACCGg-GGUC-CCGGGcGCgGGc -3'
miRNA:   3'- -CGGGUGGUggUCAGaGGUCCuUGgCC- -5'
29106 5' -57.6 NC_006146.1 + 9119 0.66 0.879708
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5'
29106 5' -57.6 NC_006146.1 + 91268 0.66 0.885814
Target:  5'- gGCUCGCCGgccugugacCCuGUCcCCGGGAcgagcucACCGGu -3'
miRNA:   3'- -CGGGUGGU---------GGuCAGaGGUCCU-------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 39364 0.66 0.886482
Target:  5'- uCCCACCACCAaacGUC-CCAcucGGcgcCCGGu -3'
miRNA:   3'- cGGGUGGUGGU---CAGaGGU---CCuu-GGCC- -5'
29106 5' -57.6 NC_006146.1 + 118195 0.66 0.886482
Target:  5'- gGCCgGCCGCCcccugacCUCCcgcccGGAGCUGGa -3'
miRNA:   3'- -CGGgUGGUGGuca----GAGGu----CCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 124341 0.66 0.886482
Target:  5'- cGCaCGCCACCcugaucGcCUCCAGGAAUCa- -3'
miRNA:   3'- -CGgGUGGUGGu-----CaGAGGUCCUUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.