miRNA display CGI


Results 61 - 80 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29106 5' -57.6 NC_006146.1 + 91268 0.66 0.885814
Target:  5'- gGCUCGCCGgccugugacCCuGUCcCCGGGAcgagcucACCGGu -3'
miRNA:   3'- -CGGGUGGU---------GGuCAGaGGUCCU-------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 9119 0.66 0.879708
Target:  5'- aUCCACCguggaGCCGGUCUCCcacGGGGCguugccucuuuCGGg -3'
miRNA:   3'- cGGGUGG-----UGGUCAGAGGu--CCUUG-----------GCC- -5'
29106 5' -57.6 NC_006146.1 + 115718 0.67 0.858159
Target:  5'- cGCCCGCCG-CGGcCgcagCCuGGGACgCGGu -3'
miRNA:   3'- -CGGGUGGUgGUCaGa---GGuCCUUG-GCC- -5'
29106 5' -57.6 NC_006146.1 + 123578 0.67 0.858159
Target:  5'- gGCCCggcuggagGCCAUCA---UCCAGGAGgcCCGGg -3'
miRNA:   3'- -CGGG--------UGGUGGUcagAGGUCCUU--GGCC- -5'
29106 5' -57.6 NC_006146.1 + 127826 0.67 0.853637
Target:  5'- aUCCGCCuCCAGcCUCCccuGGAgggugggcuugggcaGCCGGc -3'
miRNA:   3'- cGGGUGGuGGUCaGAGGu--CCU---------------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 114785 0.67 0.850584
Target:  5'- gGCCCGCgGCCAccuucGcCUUCguggAGGAGCUGGu -3'
miRNA:   3'- -CGGGUGgUGGU-----CaGAGG----UCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 11972 0.67 0.850584
Target:  5'- cGCCUuuACCugCAGUUcugCCAGGGGCa-- -3'
miRNA:   3'- -CGGG--UGGugGUCAGa--GGUCCUUGgcc -5'
29106 5' -57.6 NC_006146.1 + 86042 0.67 0.850584
Target:  5'- aGCCUACUACUAGUCUgCCuuGugugcuuuGGCCGGu -3'
miRNA:   3'- -CGGGUGGUGGUCAGA-GGucC--------UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 82056 0.67 0.850584
Target:  5'- aGCCauugGCCACCaAGggccugCUUCAGGuGCUGGg -3'
miRNA:   3'- -CGGg---UGGUGG-UCa-----GAGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 55713 0.67 0.84517
Target:  5'- uCCUACCGCCAgacggcuGUC-CCAGGccuuuacagucccuGCCGGg -3'
miRNA:   3'- cGGGUGGUGGU-------CAGaGGUCCu-------------UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 129610 0.67 0.858159
Target:  5'- uGCCU-CCGCC-GUCUCCGuc-GCCGGg -3'
miRNA:   3'- -CGGGuGGUGGuCAGAGGUccuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 102351 0.67 0.865542
Target:  5'- gGCUCGCCAgcgguCCgggcacucaaaGGUCUCCggguccucgGGGAGCUGGu -3'
miRNA:   3'- -CGGGUGGU-----GG-----------UCAGAGG---------UCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 8511 0.66 0.879708
Target:  5'- gGCCCACCGg-GGUC-CCGGGcGCgGGc -3'
miRNA:   3'- -CGGGUGGUggUCAGaGGUCCuUGgCC- -5'
29106 5' -57.6 NC_006146.1 + 123905 0.66 0.879019
Target:  5'- gGgCCGCUGCCGGUCcgacgggcgcaauUCCuGGcggcGGCCGGg -3'
miRNA:   3'- -CgGGUGGUGGUCAG-------------AGGuCC----UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 24237 0.66 0.879019
Target:  5'- cGCCCACCGCCcgggaggguuGUUUucugaccauggacCCAGGccucgugacccuGGCCGGg -3'
miRNA:   3'- -CGGGUGGUGGu---------CAGA-------------GGUCC------------UUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 85373 0.66 0.872726
Target:  5'- uGCCCGguggagaCGCCAGaagCCGGG-ACCGGc -3'
miRNA:   3'- -CGGGUg------GUGGUCagaGGUCCuUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 45661 0.66 0.872726
Target:  5'- aGUCCGgCGCCAGgccaguggCUCCccuGGAuuGCUGGa -3'
miRNA:   3'- -CGGGUgGUGGUCa-------GAGGu--CCU--UGGCC- -5'
29106 5' -57.6 NC_006146.1 + 99066 0.66 0.872017
Target:  5'- aCCCACCACaguGGUCUCCGgcucuacaucaguGGcAACCa- -3'
miRNA:   3'- cGGGUGGUGg--UCAGAGGU-------------CC-UUGGcc -5'
29106 5' -57.6 NC_006146.1 + 103576 0.67 0.868439
Target:  5'- cGCCCggGCCuggGCCGGgCUcagcgcggacguggcCCGGGAGCUGGc -3'
miRNA:   3'- -CGGG--UGG---UGGUCaGA---------------GGUCCUUGGCC- -5'
29106 5' -57.6 NC_006146.1 + 166722 0.67 0.865542
Target:  5'- uCCCGCCgaGCCcGUCUCggggCAGGAgGCCGa -3'
miRNA:   3'- cGGGUGG--UGGuCAGAG----GUCCU-UGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.