miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 130813 1.08 0.000784
Target:  5'- gAGCUGCAGCACGCGCUGCAGGCCCUCc -3'
miRNA:   3'- -UCGACGUCGUGCGCGACGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 123621 0.79 0.101054
Target:  5'- cGGCUGCAGgACGUuCUGCAGGaCCUCg -3'
miRNA:   3'- -UCGACGUCgUGCGcGACGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 40089 0.78 0.114861
Target:  5'- gGGcCUGCAGCGCGUGCUGCAGcUCgCUCa -3'
miRNA:   3'- -UC-GACGUCGUGCGCGACGUCcGG-GAG- -5'
29107 3' -62.3 NC_006146.1 + 8568 0.76 0.154304
Target:  5'- uAGCUGCAGCcCGgGCUGCAGcaccaggcagaaauGCUCUCu -3'
miRNA:   3'- -UCGACGUCGuGCgCGACGUC--------------CGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 71807 0.76 0.151633
Target:  5'- aGGC-GCGGgACGUgcggaccugGCUGCGGGCCCUCc -3'
miRNA:   3'- -UCGaCGUCgUGCG---------CGACGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 131191 0.75 0.169139
Target:  5'- aAGCUGguGCAggcCucugccuccggagcgGCGCUGCAGGCCCa- -3'
miRNA:   3'- -UCGACguCGU---G---------------CGCGACGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 111720 0.75 0.186602
Target:  5'- gGGCaaGCAGCgcaaccuauccgacgACGUGCUGguGGCCCUUg -3'
miRNA:   3'- -UCGa-CGUCG---------------UGCGCGACguCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 72503 0.74 0.213194
Target:  5'- uGGCUGCAGCGCcuGCggaggagcggacgGCUGC-GGCUCUCg -3'
miRNA:   3'- -UCGACGUCGUG--CG-------------CGACGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 64270 0.73 0.240699
Target:  5'- cGGCcGCAGCAgGCGCUGC-GGCaaUCg -3'
miRNA:   3'- -UCGaCGUCGUgCGCGACGuCCGggAG- -5'
29107 3' -62.3 NC_006146.1 + 116984 0.73 0.240699
Target:  5'- gAGgaGCucaacgAGCGCGUGgaGCGGGCCCUg -3'
miRNA:   3'- -UCgaCG------UCGUGCGCgaCGUCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 92163 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92313 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92283 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 162337 0.72 0.289728
Target:  5'- uGCUGCAGCcCGgGCUGCAGcuaugaGCgCCUUg -3'
miRNA:   3'- uCGACGUCGuGCgCGACGUC------CG-GGAG- -5'
29107 3' -62.3 NC_006146.1 + 92223 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92193 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92133 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92103 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92044 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 92014 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.