miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 2003 0.69 0.409417
Target:  5'- uGCUGaCAGU-CGCGCUGCGGGgcggcaacgaugaCCCUa -3'
miRNA:   3'- uCGAC-GUCGuGCGCGACGUCC-------------GGGAg -5'
29107 3' -62.3 NC_006146.1 + 8568 0.76 0.154304
Target:  5'- uAGCUGCAGCcCGgGCUGCAGcaccaggcagaaauGCUCUCu -3'
miRNA:   3'- -UCGACGUCGuGCgCGACGUC--------------CGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 9629 0.68 0.481124
Target:  5'- gGGgUGUaaGGCACGCGUggaUGCcgcguugggacGGGCCCUUa -3'
miRNA:   3'- -UCgACG--UCGUGCGCG---ACG-----------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 11330 0.71 0.30315
Target:  5'- cAGCUGCAuGCACGagaCGCUGUacacGGGCCUg- -3'
miRNA:   3'- -UCGACGU-CGUGC---GCGACG----UCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 12490 0.69 0.436088
Target:  5'- gAGCUGCuacCACGUGCUGCAGua-CUCg -3'
miRNA:   3'- -UCGACGuc-GUGCGCGACGUCcggGAG- -5'
29107 3' -62.3 NC_006146.1 + 13550 0.66 0.59591
Target:  5'- uGCUGCAgGCGCcgggcgccgggcuGCGCaaGCAGGCCgggggCUCa -3'
miRNA:   3'- uCGACGU-CGUG-------------CGCGa-CGUCCGG-----GAG- -5'
29107 3' -62.3 NC_006146.1 + 14212 0.71 0.32417
Target:  5'- aGGCgGUGGCGCGCaacGCGGGCCUUCu -3'
miRNA:   3'- -UCGaCGUCGUGCGcgaCGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 18090 0.67 0.518718
Target:  5'- gAGCUGUAcucGCGCGacgaGCaGCGGGCCUcCa -3'
miRNA:   3'- -UCGACGU---CGUGCg---CGaCGUCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 20869 0.68 0.499764
Target:  5'- cGCUGCAggggcGCACGaUGCUGgagcgggccaAGGCCUUCg -3'
miRNA:   3'- uCGACGU-----CGUGC-GCGACg---------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 21257 0.67 0.52734
Target:  5'- cGCUGcCGGCGCGUGCUcgaccuggugcugGCGGacGCCCg- -3'
miRNA:   3'- uCGAC-GUCGUGCGCGA-------------CGUC--CGGGag -5'
29107 3' -62.3 NC_006146.1 + 24713 0.68 0.481124
Target:  5'- gAGCccaUGCAGCACuaGCgucCAGGCgCUCg -3'
miRNA:   3'- -UCG---ACGUCGUGcgCGac-GUCCGgGAG- -5'
29107 3' -62.3 NC_006146.1 + 24863 0.71 0.336555
Target:  5'- uGCUGCAGCuggACGCGCagUGCcAGGagcugccccccugcCCCUCg -3'
miRNA:   3'- uCGACGUCG---UGCGCG--ACG-UCC--------------GGGAG- -5'
29107 3' -62.3 NC_006146.1 + 40089 0.78 0.114861
Target:  5'- gGGcCUGCAGCGCGUGCUGCAGcUCgCUCa -3'
miRNA:   3'- -UC-GACGUCGUGCGCGACGUCcGG-GAG- -5'
29107 3' -62.3 NC_006146.1 + 41777 0.67 0.547658
Target:  5'- aGGCccUGCgcccgGGCGCcCGCUcuCAGGCCCUCu -3'
miRNA:   3'- -UCG--ACG-----UCGUGcGCGAc-GUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 43665 0.67 0.53795
Target:  5'- gGGCccgGCucGCAUuCGCUcCAGGCCCUCc -3'
miRNA:   3'- -UCGa--CGu-CGUGcGCGAcGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 46061 0.68 0.471931
Target:  5'- ---cGCAGCGagugccauaGCuGCUGCAGGgCCUCg -3'
miRNA:   3'- ucgaCGUCGUg--------CG-CGACGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 46114 0.67 0.547658
Target:  5'- gAGCaGCAGCAgGCa-UGCccGGGCCCUg -3'
miRNA:   3'- -UCGaCGUCGUgCGcgACG--UCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 52461 0.66 0.577088
Target:  5'- cGUUGUAGC-CGCcgUGCAGGaCCUCg -3'
miRNA:   3'- uCGACGUCGuGCGcgACGUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 52556 0.7 0.346257
Target:  5'- gAGCgGUAGauguuCACGCGCccGCcGGCCCUCa -3'
miRNA:   3'- -UCGaCGUC-----GUGCGCGa-CGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 53499 0.68 0.490403
Target:  5'- gGGgUGCGGuCugGCucugGCUGCGGGCCg-- -3'
miRNA:   3'- -UCgACGUC-GugCG----CGACGUCCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.