miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 13550 0.66 0.59591
Target:  5'- uGCUGCAgGCGCcgggcgccgggcuGCGCaaGCAGGCCgggggCUCa -3'
miRNA:   3'- uCGACGU-CGUG-------------CGCGa-CGUCCGG-----GAG- -5'
29107 3' -62.3 NC_006146.1 + 128190 0.68 0.452922
Target:  5'- cGGCUGCcagcccgAGCGgGCGCUgGgGGGCUCUg -3'
miRNA:   3'- -UCGACG-------UCGUgCGCGA-CgUCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 115368 0.68 0.453818
Target:  5'- cGGCgugGCGGCGga-GCUGgAGGCCCUg -3'
miRNA:   3'- -UCGa--CGUCGUgcgCGACgUCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 140693 0.68 0.471931
Target:  5'- cAGCc-CGGCGgGCGCaGC-GGCCCUCu -3'
miRNA:   3'- -UCGacGUCGUgCGCGaCGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 24713 0.68 0.481124
Target:  5'- gAGCccaUGCAGCACuaGCgucCAGGCgCUCg -3'
miRNA:   3'- -UCG---ACGUCGUGcgCGac-GUCCGgGAG- -5'
29107 3' -62.3 NC_006146.1 + 124802 0.68 0.481124
Target:  5'- uGCUGCuGCuCGCGCgacgGUgcuucgcccccgAGGCCCUg -3'
miRNA:   3'- uCGACGuCGuGCGCGa---CG------------UCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 20869 0.68 0.499764
Target:  5'- cGCUGCAggggcGCACGaUGCUGgagcgggccaAGGCCUUCg -3'
miRNA:   3'- uCGACGU-----CGUGC-GCGACg---------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 18090 0.67 0.518718
Target:  5'- gAGCUGUAcucGCGCGacgaGCaGCGGGCCUcCa -3'
miRNA:   3'- -UCGACGU---CGUGCg---CGaCGUCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 21257 0.67 0.52734
Target:  5'- cGCUGcCGGCGCGUGCUcgaccuggugcugGCGGacGCCCg- -3'
miRNA:   3'- uCGAC-GUCGUGCGCGA-------------CGUC--CGGGag -5'
29107 3' -62.3 NC_006146.1 + 106647 0.67 0.528301
Target:  5'- uGCUGCGGC-CG-GCUGgucaGGGCCgUCc -3'
miRNA:   3'- uCGACGUCGuGCgCGACg---UCCGGgAG- -5'
29107 3' -62.3 NC_006146.1 + 140145 0.67 0.53795
Target:  5'- uGGCgggGguGCccCGgGUacaguuUGCGGGCCCUCa -3'
miRNA:   3'- -UCGa--CguCGu-GCgCG------ACGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 43665 0.67 0.53795
Target:  5'- gGGCccgGCucGCAUuCGCUcCAGGCCCUCc -3'
miRNA:   3'- -UCGa--CGu-CGUGcGCGAcGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 41777 0.67 0.547658
Target:  5'- aGGCccUGCgcccgGGCGCcCGCUcuCAGGCCCUCu -3'
miRNA:   3'- -UCG--ACG-----UCGUGcGCGAc-GUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 74799 0.67 0.547658
Target:  5'- cAGUucccgGCAGaCGCaGCGCUcccGCAGGCUCUUa -3'
miRNA:   3'- -UCGa----CGUC-GUG-CGCGA---CGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 74606 0.67 0.555464
Target:  5'- uGGCUGgggggaaCAGCACGUGCagccugaUGCGGcGCCCc- -3'
miRNA:   3'- -UCGAC-------GUCGUGCGCG-------ACGUC-CGGGag -5'
29107 3' -62.3 NC_006146.1 + 111150 0.67 0.557421
Target:  5'- cGCagGUAGCGC-CGCUuCAGGCgCUCg -3'
miRNA:   3'- uCGa-CGUCGUGcGCGAcGUCCGgGAG- -5'
29107 3' -62.3 NC_006146.1 + 116115 0.66 0.567233
Target:  5'- gAGCUGCccaaGGCGCGCuccCUgGC-GGCCCUg -3'
miRNA:   3'- -UCGACG----UCGUGCGc--GA-CGuCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 77901 0.66 0.577088
Target:  5'- cGCUGCuuaaCAgGCGCagggGCGGGCggCCUCg -3'
miRNA:   3'- uCGACGuc--GUgCGCGa---CGUCCG--GGAG- -5'
29107 3' -62.3 NC_006146.1 + 65054 0.66 0.590946
Target:  5'- gAGgaGCGGCACugcgucuacucggcgGCGCgggGCaggagGGGCCCUa -3'
miRNA:   3'- -UCgaCGUCGUG---------------CGCGa--CG-----UCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 122179 0.66 0.596904
Target:  5'- gAGCUGCuGCGCGaGCgGgAGGCCa-- -3'
miRNA:   3'- -UCGACGuCGUGCgCGaCgUCCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.