miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 92014 0.72 0.289728
Target:  5'- gGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 129337 0.71 0.30315
Target:  5'- cGC-GCAGCGCGCGgaGCGgccGGUUCUCg -3'
miRNA:   3'- uCGaCGUCGUGCGCgaCGU---CCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 115217 0.71 0.30315
Target:  5'- cGGCgGCGGC-CGUGCccgUGCuGGCCUUCa -3'
miRNA:   3'- -UCGaCGUCGuGCGCG---ACGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 14212 0.71 0.32417
Target:  5'- aGGCgGUGGCGCGCaacGCGGGCCUUCu -3'
miRNA:   3'- -UCGaCGUCGUGCGcgaCGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 122140 0.71 0.331414
Target:  5'- aAGCUGCGGCG-GCuGCUGgAGGCCg-- -3'
miRNA:   3'- -UCGACGUCGUgCG-CGACgUCCGGgag -5'
29107 3' -62.3 NC_006146.1 + 24863 0.71 0.336555
Target:  5'- uGCUGCAGCuggACGCGCagUGCcAGGagcugccccccugcCCCUCg -3'
miRNA:   3'- uCGACGUCG---UGCGCG--ACG-UCC--------------GGGAG- -5'
29107 3' -62.3 NC_006146.1 + 92253 0.71 0.30315
Target:  5'- uGGCUGCuGCugGgGg-GCGGGCCCg- -3'
miRNA:   3'- -UCGACGuCGugCgCgaCGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 11330 0.71 0.30315
Target:  5'- cAGCUGCAuGCACGagaCGCUGUacacGGGCCUg- -3'
miRNA:   3'- -UCGACGU-CGUGC---GCGACG----UCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 112002 0.7 0.360792
Target:  5'- -cCUGCAGguCGCGCcaaaagugggcguUGCAGGCCUccuUCa -3'
miRNA:   3'- ucGACGUCguGCGCG-------------ACGUCCGGG---AG- -5'
29107 3' -62.3 NC_006146.1 + 83707 0.7 0.346257
Target:  5'- uGCUGCuGCACaGC-CUGUAGGaCCCUg -3'
miRNA:   3'- uCGACGuCGUG-CGcGACGUCC-GGGAg -5'
29107 3' -62.3 NC_006146.1 + 52556 0.7 0.346257
Target:  5'- gAGCgGUAGauguuCACGCGCccGCcGGCCCUCa -3'
miRNA:   3'- -UCGaCGUC-----GUGCGCGa-CGuCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 55507 0.7 0.377347
Target:  5'- cAGCUGCcuccuGCACGCGagcgGcCAGGgCCUCc -3'
miRNA:   3'- -UCGACGu----CGUGCGCga--C-GUCCgGGAG- -5'
29107 3' -62.3 NC_006146.1 + 67700 0.69 0.393581
Target:  5'- cGCcGCAGCuuuucGCGCGCgaaGCGGGCaaaggCCUCg -3'
miRNA:   3'- uCGaCGUCG-----UGCGCGa--CGUCCG-----GGAG- -5'
29107 3' -62.3 NC_006146.1 + 149658 0.69 0.426509
Target:  5'- cGCgccgGCAGCGCGCcuGCacgaacuUGCAGGCCgUUu -3'
miRNA:   3'- uCGa---CGUCGUGCG--CG-------ACGUCCGGgAG- -5'
29107 3' -62.3 NC_006146.1 + 60834 0.69 0.418765
Target:  5'- gAGCUGCuGCAcaccCGCGCUGCuu-CCCUg -3'
miRNA:   3'- -UCGACGuCGU----GCGCGACGuccGGGAg -5'
29107 3' -62.3 NC_006146.1 + 2003 0.69 0.409417
Target:  5'- uGCUGaCAGU-CGCGCUGCGGGgcggcaacgaugaCCCUa -3'
miRNA:   3'- uCGAC-GUCGuGCGCGACGUCC-------------GGGAg -5'
29107 3' -62.3 NC_006146.1 + 57369 0.69 0.401866
Target:  5'- aGGCUGCGGCGgugGCGCcgguggGCuGGCCC-Cg -3'
miRNA:   3'- -UCGACGUCGUg--CGCGa-----CGuCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 115261 0.69 0.444904
Target:  5'- cGGCUGCuGCACcC-CUcGgGGGCCCUCu -3'
miRNA:   3'- -UCGACGuCGUGcGcGA-CgUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 122674 0.69 0.427375
Target:  5'- cGC-GCGGCGCucacccagGCGC-GcCAGGCCCUCc -3'
miRNA:   3'- uCGaCGUCGUG--------CGCGaC-GUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 12490 0.69 0.436088
Target:  5'- gAGCUGCuacCACGUGCUGCAGua-CUCg -3'
miRNA:   3'- -UCGACGuc-GUGCGCGACGUCcggGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.