miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 3' -62.3 NC_006146.1 + 74606 0.67 0.555464
Target:  5'- uGGCUGgggggaaCAGCACGUGCagccugaUGCGGcGCCCc- -3'
miRNA:   3'- -UCGAC-------GUCGUGCGCG-------ACGUC-CGGGag -5'
29107 3' -62.3 NC_006146.1 + 74799 0.67 0.547658
Target:  5'- cAGUucccgGCAGaCGCaGCGCUcccGCAGGCUCUUa -3'
miRNA:   3'- -UCGa----CGUC-GUG-CGCGA---CGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 127025 0.67 0.547658
Target:  5'- cAGcCUGC-GCAacaCGCUGCgcgugucaccagAGGCCCUCg -3'
miRNA:   3'- -UC-GACGuCGUgc-GCGACG------------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 46114 0.67 0.547658
Target:  5'- gAGCaGCAGCAgGCa-UGCccGGGCCCUg -3'
miRNA:   3'- -UCGaCGUCGUgCGcgACG--UCCGGGAg -5'
29107 3' -62.3 NC_006146.1 + 41777 0.67 0.547658
Target:  5'- aGGCccUGCgcccgGGCGCcCGCUcuCAGGCCCUCu -3'
miRNA:   3'- -UCG--ACG-----UCGUGcGCGAc-GUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 43665 0.67 0.53795
Target:  5'- gGGCccgGCucGCAUuCGCUcCAGGCCCUCc -3'
miRNA:   3'- -UCGa--CGu-CGUGcGCGAcGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 140145 0.67 0.53795
Target:  5'- uGGCgggGguGCccCGgGUacaguuUGCGGGCCCUCa -3'
miRNA:   3'- -UCGa--CguCGu-GCgCG------ACGUCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 167349 0.67 0.528301
Target:  5'- cGCUcgGCuGCACGCGCgGCGGcGCCg-- -3'
miRNA:   3'- uCGA--CGuCGUGCGCGaCGUC-CGGgag -5'
29107 3' -62.3 NC_006146.1 + 106647 0.67 0.528301
Target:  5'- uGCUGCGGC-CG-GCUGgucaGGGCCgUCc -3'
miRNA:   3'- uCGACGUCGuGCgCGACg---UCCGGgAG- -5'
29107 3' -62.3 NC_006146.1 + 169213 0.67 0.528301
Target:  5'- cGCUcgGCuGCACGCGCgGCGGcGCCg-- -3'
miRNA:   3'- uCGA--CGuCGUGCGCGaCGUC-CGGgag -5'
29107 3' -62.3 NC_006146.1 + 168281 0.67 0.528301
Target:  5'- cGCUcgGCuGCACGCGCgGCGGcGCCg-- -3'
miRNA:   3'- uCGA--CGuCGUGCGCGaCGUC-CGGgag -5'
29107 3' -62.3 NC_006146.1 + 69063 0.67 0.528301
Target:  5'- uGCgGCAGCccgaGCGCU-CGGGCCC-Cg -3'
miRNA:   3'- uCGaCGUCGug--CGCGAcGUCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 170144 0.67 0.528301
Target:  5'- cGCUcgGCuGCACGCGCgGCGGcGCCg-- -3'
miRNA:   3'- uCGA--CGuCGUGCGCGaCGUC-CGGgag -5'
29107 3' -62.3 NC_006146.1 + 21257 0.67 0.52734
Target:  5'- cGCUGcCGGCGCGUGCUcgaccuggugcugGCGGacGCCCg- -3'
miRNA:   3'- uCGAC-GUCGUGCGCGA-------------CGUC--CGGGag -5'
29107 3' -62.3 NC_006146.1 + 18090 0.67 0.518718
Target:  5'- gAGCUGUAcucGCGCGacgaGCaGCGGGCCUcCa -3'
miRNA:   3'- -UCGACGU---CGUGCg---CGaCGUCCGGGaG- -5'
29107 3' -62.3 NC_006146.1 + 132767 0.67 0.518718
Target:  5'- uGCcGCGgucccGCACGguCGCUGCAGGCUCg- -3'
miRNA:   3'- uCGaCGU-----CGUGC--GCGACGUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 20869 0.68 0.499764
Target:  5'- cGCUGCAggggcGCACGaUGCUGgagcgggccaAGGCCUUCg -3'
miRNA:   3'- uCGACGU-----CGUGC-GCGACg---------UCCGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 112962 0.68 0.498825
Target:  5'- uGGUgaUGCAGCACcauggcgGCGCcgGcCAGcGCCCUCu -3'
miRNA:   3'- -UCG--ACGUCGUG-------CGCGa-C-GUC-CGGGAG- -5'
29107 3' -62.3 NC_006146.1 + 167640 0.68 0.490403
Target:  5'- cGCgggGCccGGCGCGUGCcGgGGGCCCg- -3'
miRNA:   3'- uCGa--CG--UCGUGCGCGaCgUCCGGGag -5'
29107 3' -62.3 NC_006146.1 + 53499 0.68 0.490403
Target:  5'- gGGgUGCGGuCugGCucugGCUGCGGGCCg-- -3'
miRNA:   3'- -UCgACGUC-GugCG----CGACGUCCGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.