miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 5' -58.4 NC_006146.1 + 63822 0.66 0.850298
Target:  5'- cACGacuauccagGUCUUGCcGugGCGCCGGGGa -3'
miRNA:   3'- -UGCga-------CAGGAUGcCugUGCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 50275 0.66 0.850298
Target:  5'- -gGCcGUCCUGgcaGGACACGaCCGaGGGg -3'
miRNA:   3'- ugCGaCAGGAUg--CCUGUGC-GGC-CUCa -5'
29107 5' -58.4 NC_006146.1 + 57370 0.66 0.842497
Target:  5'- -gGCUG-Cg-GCGGugGCGCCGGuGg -3'
miRNA:   3'- ugCGACaGgaUGCCugUGCGGCCuCa -5'
29107 5' -58.4 NC_006146.1 + 71768 0.66 0.842497
Target:  5'- uCGCUGgagccCCUGUGGAgACGCCuGAGg -3'
miRNA:   3'- uGCGACa----GGAUGCCUgUGCGGcCUCa -5'
29107 5' -58.4 NC_006146.1 + 55676 0.66 0.841707
Target:  5'- gGCGUUGaaggCCagcACGGGCAcggccgcCGCCGGGGg -3'
miRNA:   3'- -UGCGACa---GGa--UGCCUGU-------GCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 25380 0.66 0.837729
Target:  5'- aACGCcGUCCgccgcggcaagggcUACgucagagucuccguGGACACGCCGGAc- -3'
miRNA:   3'- -UGCGaCAGG--------------AUG--------------CCUGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 40693 0.66 0.834515
Target:  5'- cGCGCUGUCCUucguccuuUGGAU--GUCGGGGa -3'
miRNA:   3'- -UGCGACAGGAu-------GCCUGugCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 2318 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 1386 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 455 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 3250 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 126771 0.67 0.80697
Target:  5'- uGCGCacGUCCUGCccccccuccucgccGGGCA-GCCGGGGc -3'
miRNA:   3'- -UGCGa-CAGGAUG--------------CCUGUgCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 44253 0.67 0.800907
Target:  5'- gGCGgUGUCCauugccccUGCGGGC-C-CCGGGGUg -3'
miRNA:   3'- -UGCgACAGG--------AUGCCUGuGcGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 44666 0.67 0.800907
Target:  5'- gGCGCcuggGUCCcaaaACGGACGaugaUGCCGGuGUg -3'
miRNA:   3'- -UGCGa---CAGGa---UGCCUGU----GCGGCCuCA- -5'
29107 5' -58.4 NC_006146.1 + 64463 0.67 0.764984
Target:  5'- gGCGCUGUCCUGCugaaGGGCAUuUCuGAGg -3'
miRNA:   3'- -UGCGACAGGAUG----CCUGUGcGGcCUCa -5'
29107 5' -58.4 NC_006146.1 + 109531 0.68 0.740639
Target:  5'- -aGCUccgGUCCUcccuccucgcaguacACGGGCACGCUGGuGa -3'
miRNA:   3'- ugCGA---CAGGA---------------UGCCUGUGCGGCCuCa -5'
29107 5' -58.4 NC_006146.1 + 141654 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 144731 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 147809 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 153965 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.