miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29107 5' -58.4 NC_006146.1 + 130848 1.06 0.003155
Target:  5'- gACGCUGUCCUACGGACACGCCGGAGUc -3'
miRNA:   3'- -UGCGACAGGAUGCCUGUGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 6652 0.72 0.530193
Target:  5'- uACGCUGcCCUaGCGGuuAUGCUGGGGa -3'
miRNA:   3'- -UGCGACaGGA-UGCCugUGCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 58414 0.71 0.559325
Target:  5'- cCGCUaUCuCUAUGaGCGCGCCGGGGUg -3'
miRNA:   3'- uGCGAcAG-GAUGCcUGUGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 99992 0.7 0.618716
Target:  5'- uCGC-GUCCUcgggaucgggaGCGGGCACGUCgGGAGg -3'
miRNA:   3'- uGCGaCAGGA-----------UGCCUGUGCGG-CCUCa -5'
29107 5' -58.4 NC_006146.1 + 30215 0.7 0.628688
Target:  5'- cCGCUGcgcCCgcCGGGCugGCCGGAu- -3'
miRNA:   3'- uGCGACa--GGauGCCUGugCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 150887 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 147809 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 144731 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 141654 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 153965 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 157043 0.69 0.668524
Target:  5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3'
miRNA:   3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 109531 0.68 0.740639
Target:  5'- -aGCUccgGUCCUcccuccucgcaguacACGGGCACGCUGGuGa -3'
miRNA:   3'- ugCGA---CAGGA---------------UGCCUGUGCGGCCuCa -5'
29107 5' -58.4 NC_006146.1 + 64463 0.67 0.764984
Target:  5'- gGCGCUGUCCUGCugaaGGGCAUuUCuGAGg -3'
miRNA:   3'- -UGCGACAGGAUG----CCUGUGcGGcCUCa -5'
29107 5' -58.4 NC_006146.1 + 44666 0.67 0.800907
Target:  5'- gGCGCcuggGUCCcaaaACGGACGaugaUGCCGGuGUg -3'
miRNA:   3'- -UGCGa---CAGGa---UGCCUGU----GCGGCCuCA- -5'
29107 5' -58.4 NC_006146.1 + 44253 0.67 0.800907
Target:  5'- gGCGgUGUCCauugccccUGCGGGC-C-CCGGGGUg -3'
miRNA:   3'- -UGCgACAGG--------AUGCCUGuGcGGCCUCA- -5'
29107 5' -58.4 NC_006146.1 + 126771 0.67 0.80697
Target:  5'- uGCGCacGUCCUGCccccccuccucgccGGGCA-GCCGGGGc -3'
miRNA:   3'- -UGCGa-CAGGAUG--------------CCUGUgCGGCCUCa -5'
29107 5' -58.4 NC_006146.1 + 1386 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 2318 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 3250 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5'
29107 5' -58.4 NC_006146.1 + 455 0.67 0.809546
Target:  5'- cACGCccccggGUCCccCGGcACGCGCCGGGc- -3'
miRNA:   3'- -UGCGa-----CAGGauGCC-UGUGCGGCCUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.