Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29107 | 5' | -58.4 | NC_006146.1 | + | 157043 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 153965 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 150887 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 147809 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 144731 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 141654 | 0.69 | 0.668524 |
Target: 5'- gACGCUGgcacacCGGGC-CGCCGGGGUc -3' miRNA: 3'- -UGCGACaggau-GCCUGuGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 130848 | 1.06 | 0.003155 |
Target: 5'- gACGCUGUCCUACGGACACGCCGGAGUc -3' miRNA: 3'- -UGCGACAGGAUGCCUGUGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 126771 | 0.67 | 0.80697 |
Target: 5'- uGCGCacGUCCUGCccccccuccucgccGGGCA-GCCGGGGc -3' miRNA: 3'- -UGCGa-CAGGAUG--------------CCUGUgCGGCCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 109531 | 0.68 | 0.740639 |
Target: 5'- -aGCUccgGUCCUcccuccucgcaguacACGGGCACGCUGGuGa -3' miRNA: 3'- ugCGA---CAGGA---------------UGCCUGUGCGGCCuCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 99992 | 0.7 | 0.618716 |
Target: 5'- uCGC-GUCCUcgggaucgggaGCGGGCACGUCgGGAGg -3' miRNA: 3'- uGCGaCAGGA-----------UGCCUGUGCGG-CCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 71768 | 0.66 | 0.842497 |
Target: 5'- uCGCUGgagccCCUGUGGAgACGCCuGAGg -3' miRNA: 3'- uGCGACa----GGAUGCCUgUGCGGcCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 64463 | 0.67 | 0.764984 |
Target: 5'- gGCGCUGUCCUGCugaaGGGCAUuUCuGAGg -3' miRNA: 3'- -UGCGACAGGAUG----CCUGUGcGGcCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 63822 | 0.66 | 0.850298 |
Target: 5'- cACGacuauccagGUCUUGCcGugGCGCCGGGGa -3' miRNA: 3'- -UGCga-------CAGGAUGcCugUGCGGCCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 58414 | 0.71 | 0.559325 |
Target: 5'- cCGCUaUCuCUAUGaGCGCGCCGGGGUg -3' miRNA: 3'- uGCGAcAG-GAUGCcUGUGCGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 57370 | 0.66 | 0.842497 |
Target: 5'- -gGCUG-Cg-GCGGugGCGCCGGuGg -3' miRNA: 3'- ugCGACaGgaUGCCugUGCGGCCuCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 55676 | 0.66 | 0.841707 |
Target: 5'- gGCGUUGaaggCCagcACGGGCAcggccgcCGCCGGGGg -3' miRNA: 3'- -UGCGACa---GGa--UGCCUGU-------GCGGCCUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 50275 | 0.66 | 0.850298 |
Target: 5'- -gGCcGUCCUGgcaGGACACGaCCGaGGGg -3' miRNA: 3'- ugCGaCAGGAUg--CCUGUGC-GGC-CUCa -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 44666 | 0.67 | 0.800907 |
Target: 5'- gGCGCcuggGUCCcaaaACGGACGaugaUGCCGGuGUg -3' miRNA: 3'- -UGCGa---CAGGa---UGCCUGU----GCGGCCuCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 44253 | 0.67 | 0.800907 |
Target: 5'- gGCGgUGUCCauugccccUGCGGGC-C-CCGGGGUg -3' miRNA: 3'- -UGCgACAGG--------AUGCCUGuGcGGCCUCA- -5' |
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29107 | 5' | -58.4 | NC_006146.1 | + | 40693 | 0.66 | 0.834515 |
Target: 5'- cGCGCUGUCCUucguccuuUGGAU--GUCGGGGa -3' miRNA: 3'- -UGCGACAGGAu-------GCCUGugCGGCCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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