miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29108 5' -58.1 NC_006146.1 + 93271 0.66 0.86237
Target:  5'- aGCCgCUCGCGggguugcCCUCGCCGguggucaUCUCUGa-- -3'
miRNA:   3'- -UGG-GAGCGU-------GGAGCGGC-------AGAGAUgac -5'
29108 5' -58.1 NC_006146.1 + 47795 0.66 0.848666
Target:  5'- aGCCCcgucuaGCGCCcacCGCCGUCUCauggGCUc -3'
miRNA:   3'- -UGGGag----CGUGGa--GCGGCAGAGa---UGAc -5'
29108 5' -58.1 NC_006146.1 + 4922 0.66 0.840788
Target:  5'- gACCCUCGCugUcgggUgGCCGUgCUCUGu-- -3'
miRNA:   3'- -UGGGAGCGugG----AgCGGCA-GAGAUgac -5'
29108 5' -58.1 NC_006146.1 + 130833 0.67 0.816088
Target:  5'- gGCCCUC-CGCCgggagaCGCUGUC-CUACg- -3'
miRNA:   3'- -UGGGAGcGUGGa-----GCGGCAGaGAUGac -5'
29108 5' -58.1 NC_006146.1 + 107159 0.67 0.789946
Target:  5'- cGCCCaccagaaacaCGuCGCCUcCGCCGUCUUcACUGa -3'
miRNA:   3'- -UGGGa---------GC-GUGGA-GCGGCAGAGaUGAC- -5'
29108 5' -58.1 NC_006146.1 + 160180 0.67 0.788158
Target:  5'- gGCUCUgGCugcccagauuauCCUCGCCaGUCUgUGCUGc -3'
miRNA:   3'- -UGGGAgCGu-----------GGAGCGG-CAGAgAUGAC- -5'
29108 5' -58.1 NC_006146.1 + 91204 0.67 0.780949
Target:  5'- cCCCcCGCcuGCCUguugGCCgGUCUCUGCUGu -3'
miRNA:   3'- uGGGaGCG--UGGAg---CGG-CAGAGAUGAC- -5'
29108 5' -58.1 NC_006146.1 + 48304 0.67 0.771824
Target:  5'- cCCCUCGC-CCUCcaCCGUCggaggUGCUGg -3'
miRNA:   3'- uGGGAGCGuGGAGc-GGCAGag---AUGAC- -5'
29108 5' -58.1 NC_006146.1 + 110393 0.68 0.76258
Target:  5'- gGCCCagugggaGCAcCCUCGCCGUCgggggaGCUGg -3'
miRNA:   3'- -UGGGag-----CGU-GGAGCGGCAGaga---UGAC- -5'
29108 5' -58.1 NC_006146.1 + 127898 0.7 0.655462
Target:  5'- aGCCCUCGCACCUCucacCCGgcggcaaUUCUACc- -3'
miRNA:   3'- -UGGGAGCGUGGAGc---GGCa------GAGAUGac -5'
29108 5' -58.1 NC_006146.1 + 122884 0.7 0.605385
Target:  5'- -gCCUCGCACCUC-CCGg--UUGCUGg -3'
miRNA:   3'- ugGGAGCGUGGAGcGGCagaGAUGAC- -5'
29108 5' -58.1 NC_006146.1 + 63287 0.71 0.585438
Target:  5'- aGCCCUgGCACCUCcgguauCUGUCccugUCUGCUGc -3'
miRNA:   3'- -UGGGAgCGUGGAGc-----GGCAG----AGAUGAC- -5'
29108 5' -58.1 NC_006146.1 + 41658 0.82 0.146343
Target:  5'- gACCCUCGCGCCUCaccugggcCCGUCcCUGCUGg -3'
miRNA:   3'- -UGGGAGCGUGGAGc-------GGCAGaGAUGAC- -5'
29108 5' -58.1 NC_006146.1 + 133017 1.07 0.002879
Target:  5'- gACCCUCGCACCUCGCCGUCUCUACUGc -3'
miRNA:   3'- -UGGGAGCGUGGAGCGGCAGAGAUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.