miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2911 3' -61.5 NC_001493.1 + 13584 0.67 0.59774
Target:  5'- -cGACCCGuCCCGaGGcucacgaagcggugcAACGAUCGCgCGg -3'
miRNA:   3'- cuCUGGGCuGGGC-CC---------------UUGCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 123100 0.67 0.593835
Target:  5'- aGGGCUC-ACCCGGGAugcacuuucGgGACCGCuCGg -3'
miRNA:   3'- cUCUGGGcUGGGCCCU---------UgCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 7546 0.67 0.593835
Target:  5'- aGGGCUC-ACCCGGGAugcacuuucGgGACCGCuCGg -3'
miRNA:   3'- cUCUGGGcUGGGCCCU---------UgCUGGCG-GC- -5'
2911 3' -61.5 NC_001493.1 + 118555 0.67 0.593835
Target:  5'- aGGGCgcgaUCGACCCGGGGucauCGGUCGCCa -3'
miRNA:   3'- cUCUG----GGCUGGGCCCUu---GCUGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 3001 0.67 0.593835
Target:  5'- aGGGCgcgaUCGACCCGGGGucauCGGUCGCCa -3'
miRNA:   3'- cUCUG----GGCUGGGCCCUu---GCUGGCGGc -5'
2911 3' -61.5 NC_001493.1 + 62224 0.67 0.587986
Target:  5'- -cGGCCCGGucuuuuuuuuucggcUCCGGGAuCGuuCGCCGa -3'
miRNA:   3'- cuCUGGGCU---------------GGGCCCUuGCugGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 21226 0.67 0.584093
Target:  5'- aAGGCCCGACCUuca---GGCCGCCGc -3'
miRNA:   3'- cUCUGGGCUGGGcccuugCUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 118675 0.68 0.56471
Target:  5'- cGGACCUcgGACUCGGGAA-GAaccucacccCCGCCGa -3'
miRNA:   3'- cUCUGGG--CUGGGCCCUUgCU---------GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 3121 0.68 0.56471
Target:  5'- cGGACCUcgGACUCGGGAA-GAaccucacccCCGCCGa -3'
miRNA:   3'- cUCUGGG--CUGGGCCCUUgCU---------GGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 26389 0.68 0.555081
Target:  5'- -cGACCCagacgGGCCCGGGuuuCGGCC-CCa -3'
miRNA:   3'- cuCUGGG-----CUGGGCCCuu-GCUGGcGGc -5'
2911 3' -61.5 NC_001493.1 + 58817 0.68 0.555081
Target:  5'- cGGugUCGuCCCGcGGGcCGACCGaCCGg -3'
miRNA:   3'- cUCugGGCuGGGC-CCUuGCUGGC-GGC- -5'
2911 3' -61.5 NC_001493.1 + 101247 0.68 0.555081
Target:  5'- cGGGGCCCGcucgauagacacACCCGGGAugcuCGAUucccaCGCUGu -3'
miRNA:   3'- -CUCUGGGC------------UGGGCCCUu---GCUG-----GCGGC- -5'
2911 3' -61.5 NC_001493.1 + 74636 0.68 0.555081
Target:  5'- aAGGCCCcuucgcgcuuGcACCUGGGGAUGAUCGCgGg -3'
miRNA:   3'- cUCUGGG----------C-UGGGCCCUUGCUGGCGgC- -5'
2911 3' -61.5 NC_001493.1 + 94699 0.68 0.555081
Target:  5'- gGGGuacguCCCGguggguGCCaCGGGGGCGAUgGCCGu -3'
miRNA:   3'- -CUCu----GGGC------UGG-GCCCUUGCUGgCGGC- -5'
2911 3' -61.5 NC_001493.1 + 52860 0.68 0.555081
Target:  5'- uGGACUCGGCCaggaaaGGGu-CGuCCGCCGc -3'
miRNA:   3'- cUCUGGGCUGGg-----CCCuuGCuGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 14153 0.68 0.555081
Target:  5'- aGGGACgCGcCCCGGGuGACGACCucgugacccugGCCc -3'
miRNA:   3'- -CUCUGgGCuGGGCCC-UUGCUGG-----------CGGc -5'
2911 3' -61.5 NC_001493.1 + 94698 0.68 0.554121
Target:  5'- uGGGAUCuCGAaguauauCCCGGGGAccCGugCGCCa -3'
miRNA:   3'- -CUCUGG-GCU-------GGGCCCUU--GCugGCGGc -5'
2911 3' -61.5 NC_001493.1 + 106501 0.68 0.5455
Target:  5'- -uGGCCCGGCaCGccauGGCGGCCGCCGa -3'
miRNA:   3'- cuCUGGGCUGgGCcc--UUGCUGGCGGC- -5'
2911 3' -61.5 NC_001493.1 + 8128 0.68 0.544545
Target:  5'- gGAGAgCCCGACCCGcGGcguggacgaagugGACGG-CGCCu -3'
miRNA:   3'- -CUCU-GGGCUGGGC-CC-------------UUGCUgGCGGc -5'
2911 3' -61.5 NC_001493.1 + 123683 0.68 0.544545
Target:  5'- gGAGAgCCCGACCCGcGGcguggacgaagugGACGG-CGCCu -3'
miRNA:   3'- -CUCU-GGGCUGGGC-CC-------------UUGCUgGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.