Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2911 | 5' | -55.4 | NC_001493.1 | + | 76395 | 0.71 | 0.670121 |
Target: 5'- cGCGGAGCUCGUGAacCGGGUCa---- -3' miRNA: 3'- cUGCCUCGAGCACUa-GCUCAGcaggc -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 37546 | 0.66 | 0.910683 |
Target: 5'- gGAUGGAGgggUCGUcGAcCGGGUCGcCCGg -3' miRNA: 3'- -CUGCCUCg--AGCA-CUaGCUCAGCaGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 113323 | 0.67 | 0.870547 |
Target: 5'- cACGGGGaUCGUGccgggucugcgcGUCGAGUCGagugUCCGu -3' miRNA: 3'- cUGCCUCgAGCAC------------UAGCUCAGC----AGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 69592 | 0.68 | 0.863083 |
Target: 5'- cGCGGccucGGCUCGUucgcGAUCGGGgacaCGUCCc -3' miRNA: 3'- cUGCC----UCGAGCA----CUAGCUCa---GCAGGc -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 124437 | 0.68 | 0.863083 |
Target: 5'- uGAUGGAGCgCGUGG-CGGG--GUCCGg -3' miRNA: 3'- -CUGCCUCGaGCACUaGCUCagCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 8883 | 0.68 | 0.863083 |
Target: 5'- uGAUGGAGCgCGUGG-CGGG--GUCCGg -3' miRNA: 3'- -CUGCCUCGaGCACUaGCUCagCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 42138 | 0.68 | 0.855412 |
Target: 5'- cACGGAGCUCauc-UCGAGUgGUCaCGg -3' miRNA: 3'- cUGCCUCGAGcacuAGCUCAgCAG-GC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 52857 | 0.68 | 0.839469 |
Target: 5'- uGAUGGA-CUCGgccagGAaaGGGUCGUCCGc -3' miRNA: 3'- -CUGCCUcGAGCa----CUagCUCAGCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 111271 | 0.69 | 0.796455 |
Target: 5'- -cCGG-GCUCGUaaaCGAGUCGUCUGu -3' miRNA: 3'- cuGCCuCGAGCAcuaGCUCAGCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 7618 | 0.68 | 0.863083 |
Target: 5'- uGAUGGGGCUCGUGug-----CGUCCGc -3' miRNA: 3'- -CUGCCUCGAGCACuagcucaGCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 123173 | 0.68 | 0.863083 |
Target: 5'- uGAUGGGGCUCGUGug-----CGUCCGc -3' miRNA: 3'- -CUGCCUCGAGCACuagcucaGCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 22466 | 0.68 | 0.854633 |
Target: 5'- cACGGGGgUUGUGuGUCGGGUuuccucgUGUCCGa -3' miRNA: 3'- cUGCCUCgAGCAC-UAGCUCA-------GCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 33333 | 0.7 | 0.75933 |
Target: 5'- cGGCGGGGacccUGaUGAUCGGGUCGUCgGc -3' miRNA: 3'- -CUGCCUCga--GC-ACUAGCUCAGCAGgC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 10809 | 0.72 | 0.62928 |
Target: 5'- --gGGAGCUCGcgcGAUCGGGcgCGUCCc -3' miRNA: 3'- cugCCUCGAGCa--CUAGCUCa-GCAGGc -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 126363 | 0.72 | 0.62928 |
Target: 5'- --gGGAGCUCGcgcGAUCGGGcgCGUCCc -3' miRNA: 3'- cugCCUCGAGCa--CUAGCUCa-GCAGGc -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 39495 | 1.08 | 0.003918 |
Target: 5'- gGACGGAGCUCGUGAUCGAGUCGUCCGu -3' miRNA: 3'- -CUGCCUCGAGCACUAGCUCAGCAGGC- -5' |
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2911 | 5' | -55.4 | NC_001493.1 | + | 82095 | 0.66 | 0.916563 |
Target: 5'- cACGGAGCUCGUcga-GGGUCuucUCCGc -3' miRNA: 3'- cUGCCUCGAGCAcuagCUCAGc--AGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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