miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29110 3' -46.6 NC_006146.1 + 36236 0.66 0.999972
Target:  5'- --cCGGGGaggAGGCAgggCGGCUU-CUGGa -3'
miRNA:   3'- gaaGCUCCa--UUUGUa--GCCGAAuGACU- -5'
29110 3' -46.6 NC_006146.1 + 63768 0.66 0.999932
Target:  5'- --cUGAGGUGAACAccguUCuGCUUGuCUGGg -3'
miRNA:   3'- gaaGCUCCAUUUGU----AGcCGAAU-GACU- -5'
29110 3' -46.6 NC_006146.1 + 115421 0.68 0.999595
Target:  5'- --cCGGGGUAAcuauaaucucACAggUGGCUUGCUGc -3'
miRNA:   3'- gaaGCUCCAUU----------UGUa-GCCGAAUGACu -5'
29110 3' -46.6 NC_006146.1 + 56853 0.68 0.999492
Target:  5'- --gCGGGGgcGGCAgcuUUGGCUgggGCUGGc -3'
miRNA:   3'- gaaGCUCCauUUGU---AGCCGAa--UGACU- -5'
29110 3' -46.6 NC_006146.1 + 63082 0.68 0.999492
Target:  5'- -cUCGGGGgGAACAUgCGGUggccucGCUGAa -3'
miRNA:   3'- gaAGCUCCaUUUGUA-GCCGaa----UGACU- -5'
29110 3' -46.6 NC_006146.1 + 32063 0.68 0.999366
Target:  5'- --gCGuGGcGAGCAUCGGUcaGCUGAc -3'
miRNA:   3'- gaaGCuCCaUUUGUAGCCGaaUGACU- -5'
29110 3' -46.6 NC_006146.1 + 135893 0.68 0.999366
Target:  5'- --gCGuGGcGAGCAUCGGUcaGCUGAc -3'
miRNA:   3'- gaaGCuCCaUUUGUAGCCGaaUGACU- -5'
29110 3' -46.6 NC_006146.1 + 128499 0.69 0.998261
Target:  5'- cCUUCGAGGacGGCGUCGGggUGgccCUGGg -3'
miRNA:   3'- -GAAGCUCCauUUGUAGCCgaAU---GACU- -5'
29110 3' -46.6 NC_006146.1 + 146217 0.7 0.997021
Target:  5'- --cCGGGGUAAGCggCGGCcaugGCUGc -3'
miRNA:   3'- gaaGCUCCAUUUGuaGCCGaa--UGACu -5'
29110 3' -46.6 NC_006146.1 + 111352 0.72 0.98844
Target:  5'- --cCGAGGUGGGCAUCagGGCgacaaACUGGg -3'
miRNA:   3'- gaaGCUCCAUUUGUAG--CCGaa---UGACU- -5'
29110 3' -46.6 NC_006146.1 + 133735 1.11 0.021189
Target:  5'- gCUUCGAGGUAAACAUCGGCUUACUGAa -3'
miRNA:   3'- -GAAGCUCCAUUUGUAGCCGAAUGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.