miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29110 5' -54.6 NC_006146.1 + 126185 0.66 0.957529
Target:  5'- gGGcCAGUGGGCaggcacCUGauagagUCCCUCAUc- -3'
miRNA:   3'- -CCaGUCACCCG------GACaa----AGGGAGUGuc -5'
29110 5' -54.6 NC_006146.1 + 129111 0.66 0.956777
Target:  5'- cGG-CAGaGGGCCUGagagcgggcgCCCgggCGCAGg -3'
miRNA:   3'- -CCaGUCaCCCGGACaaa-------GGGa--GUGUC- -5'
29110 5' -54.6 NC_006146.1 + 52091 0.66 0.953677
Target:  5'- cGGUCGG-GGGCCggcgaggccaucUGUUcCCCgUCGCuGg -3'
miRNA:   3'- -CCAGUCaCCCGG------------ACAAaGGG-AGUGuC- -5'
29110 5' -54.6 NC_006146.1 + 168496 0.66 0.951256
Target:  5'- cGGUCGGgGGGCCgGggaccaacagagCCCUCugGa -3'
miRNA:   3'- -CCAGUCaCCCGGaCaaa---------GGGAGugUc -5'
29110 5' -54.6 NC_006146.1 + 107102 0.66 0.949596
Target:  5'- aGUgGGUGGGUCUGggaaggggCCUUCACc- -3'
miRNA:   3'- cCAgUCACCCGGACaaa-----GGGAGUGuc -5'
29110 5' -54.6 NC_006146.1 + 128059 0.66 0.945282
Target:  5'- ----cGUGGGCCUGgcggCCCUCGa-- -3'
miRNA:   3'- ccaguCACCCGGACaaa-GGGAGUguc -5'
29110 5' -54.6 NC_006146.1 + 82516 0.66 0.944838
Target:  5'- uGGUCAG-GGccugcacGCCUGguaauaucagccUUUCCCUgGCAGc -3'
miRNA:   3'- -CCAGUCaCC-------CGGAC------------AAAGGGAgUGUC- -5'
29110 5' -54.6 NC_006146.1 + 164247 0.66 0.944838
Target:  5'- -aUCAGUgGGGCCUGgugggccaccUCCCUCGuugcuuuCAGg -3'
miRNA:   3'- ccAGUCA-CCCGGACaa--------AGGGAGU-------GUC- -5'
29110 5' -54.6 NC_006146.1 + 104690 0.67 0.940733
Target:  5'- aGGggCAGcUGGGCCUGgaUCUCgUCGCc- -3'
miRNA:   3'- -CCa-GUC-ACCCGGACaaAGGG-AGUGuc -5'
29110 5' -54.6 NC_006146.1 + 112519 0.67 0.935946
Target:  5'- gGGcCGGUggaGGGCCUGggUCaCCUCGa-- -3'
miRNA:   3'- -CCaGUCA---CCCGGACaaAG-GGAGUguc -5'
29110 5' -54.6 NC_006146.1 + 109415 0.67 0.925656
Target:  5'- cGUCGGUcaGGGCCcGUUUggccCCCUCAaaaAGa -3'
miRNA:   3'- cCAGUCA--CCCGGaCAAA----GGGAGUg--UC- -5'
29110 5' -54.6 NC_006146.1 + 137778 0.67 0.920151
Target:  5'- cGGUCcgGGUGGGCCUGg--UCCgC-CGGa -3'
miRNA:   3'- -CCAG--UCACCCGGACaaaGGGaGuGUC- -5'
29110 5' -54.6 NC_006146.1 + 36477 0.67 0.914406
Target:  5'- gGGUCAuUGGGCCUGUUgaaaaguaaaCCg-GCAGg -3'
miRNA:   3'- -CCAGUcACCCGGACAAag--------GGagUGUC- -5'
29110 5' -54.6 NC_006146.1 + 126628 0.67 0.914406
Target:  5'- uGGUCGGUGGGCacac--CCCggggccCGCAGg -3'
miRNA:   3'- -CCAGUCACCCGgacaaaGGGa-----GUGUC- -5'
29110 5' -54.6 NC_006146.1 + 71650 0.67 0.914406
Target:  5'- uGGUUcuuGGUGGGCUUGUUaaUCCUgagC-CAGg -3'
miRNA:   3'- -CCAG---UCACCCGGACAA--AGGGa--GuGUC- -5'
29110 5' -54.6 NC_006146.1 + 159260 0.68 0.90472
Target:  5'- -aUCGGUgcaacgccgccacgcGGGCCUcGgggCCCUCGCAGu -3'
miRNA:   3'- ccAGUCA---------------CCCGGA-CaaaGGGAGUGUC- -5'
29110 5' -54.6 NC_006146.1 + 121565 0.73 0.642077
Target:  5'- aGGUgaaaAGUGGGCCUGagUcucacauuaaagccCCCUCACAGc -3'
miRNA:   3'- -CCAg---UCACCCGGACaaA--------------GGGAGUGUC- -5'
29110 5' -54.6 NC_006146.1 + 133774 1.12 0.002971
Target:  5'- aGGUCAGUGGGCCUGUUUCCCUCACAGa -3'
miRNA:   3'- -CCAGUCACCCGGACAAAGGGAGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.