miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29111 5' -58.8 NC_006146.1 + 55833 0.66 0.793519
Target:  5'- cGGCCUGGgUGGGCgGaauGUUCGCCc- -3'
miRNA:   3'- cUUGGGCC-ACCCGgCgu-CAAGUGGau -5'
29111 5' -58.8 NC_006146.1 + 62328 0.67 0.766127
Target:  5'- --cCCCGGgGGuGCCGuCAGcUCGCCUc -3'
miRNA:   3'- cuuGGGCCaCC-CGGC-GUCaAGUGGAu -5'
29111 5' -58.8 NC_006146.1 + 83770 0.67 0.766127
Target:  5'- uGGCCUGGUGGGagguCGCAGUcgACCc- -3'
miRNA:   3'- cUUGGGCCACCCg---GCGUCAagUGGau -5'
29111 5' -58.8 NC_006146.1 + 124536 0.67 0.743453
Target:  5'- gGGGCCUGG-GGGagcugcugucggaCGCGGUccUCACCUAc -3'
miRNA:   3'- -CUUGGGCCaCCCg------------GCGUCA--AGUGGAU- -5'
29111 5' -58.8 NC_006146.1 + 110881 0.67 0.738656
Target:  5'- cGGGCUCGGgcgcaggcggggacgGGGCCGC-GUUgGCCUu -3'
miRNA:   3'- -CUUGGGCCa--------------CCCGGCGuCAAgUGGAu -5'
29111 5' -58.8 NC_006146.1 + 51837 0.67 0.737694
Target:  5'- -cGCCggaGGUGGGCUGCGGUUgcagGCCa- -3'
miRNA:   3'- cuUGGg--CCACCCGGCGUCAAg---UGGau -5'
29111 5' -58.8 NC_006146.1 + 14842 0.67 0.737694
Target:  5'- cGGGCCCG--GGGCCGCGGgagGCCg- -3'
miRNA:   3'- -CUUGGGCcaCCCGGCGUCaagUGGau -5'
29111 5' -58.8 NC_006146.1 + 55336 0.67 0.737694
Target:  5'- --uCUCGaGUaGGGCCGCGG-UCGCCUc -3'
miRNA:   3'- cuuGGGC-CA-CCCGGCGUCaAGUGGAu -5'
29111 5' -58.8 NC_006146.1 + 60960 0.67 0.737694
Target:  5'- aGGCCCGG-GGGUgGgGGgUCACCUu -3'
miRNA:   3'- cUUGGGCCaCCCGgCgUCaAGUGGAu -5'
29111 5' -58.8 NC_006146.1 + 123321 0.67 0.728026
Target:  5'- uGGAUCCGGgacgucugcgGGGCCGuCAGgggucUCGCCg- -3'
miRNA:   3'- -CUUGGGCCa---------CCCGGC-GUCa----AGUGGau -5'
29111 5' -58.8 NC_006146.1 + 26551 0.67 0.718278
Target:  5'- uAGCCUGGUGGGC-GUAGUggggcaagugcgUCugCUAa -3'
miRNA:   3'- cUUGGGCCACCCGgCGUCA------------AGugGAU- -5'
29111 5' -58.8 NC_006146.1 + 166538 0.68 0.698575
Target:  5'- gGAGCCCGcG-GGGCCGUGGccacgUCGCUg- -3'
miRNA:   3'- -CUUGGGC-CaCCCGGCGUCa----AGUGGau -5'
29111 5' -58.8 NC_006146.1 + 87211 0.68 0.658587
Target:  5'- aGGACa-GGUGgcGGCCGCAGccaUCACCUGg -3'
miRNA:   3'- -CUUGggCCAC--CCGGCGUCa--AGUGGAU- -5'
29111 5' -58.8 NC_006146.1 + 137606 0.69 0.648518
Target:  5'- gGGGCCgGGUgccccuGGGuCCGCugguucGGUUCACCUGg -3'
miRNA:   3'- -CUUGGgCCA------CCC-GGCG------UCAAGUGGAU- -5'
29111 5' -58.8 NC_006146.1 + 33107 0.69 0.62835
Target:  5'- cAGCCgGGU-GGCCGCcggcgGGUUCGCCg- -3'
miRNA:   3'- cUUGGgCCAcCCGGCG-----UCAAGUGGau -5'
29111 5' -58.8 NC_006146.1 + 53688 0.69 0.62835
Target:  5'- aAGCCCGG-GGGCaGCAGUUugagacugcCACCUc -3'
miRNA:   3'- cUUGGGCCaCCCGgCGUCAA---------GUGGAu -5'
29111 5' -58.8 NC_006146.1 + 76573 0.69 0.598137
Target:  5'- aGAGCauugCGGgaugGGGCCGCAGaggCACCg- -3'
miRNA:   3'- -CUUGg---GCCa---CCCGGCGUCaa-GUGGau -5'
29111 5' -58.8 NC_006146.1 + 44691 0.7 0.588106
Target:  5'- uGAugCCGGUGuGGCgGCGGUg-GCCg- -3'
miRNA:   3'- -CUugGGCCAC-CCGgCGUCAagUGGau -5'
29111 5' -58.8 NC_006146.1 + 146845 0.74 0.368297
Target:  5'- aGAGCCCGGgccuggcucgGGGCCGCG--UCACCc- -3'
miRNA:   3'- -CUUGGGCCa---------CCCGGCGUcaAGUGGau -5'
29111 5' -58.8 NC_006146.1 + 133922 1.06 0.002507
Target:  5'- aGAACCCGGUGGGCCGCAGUUCACCUAc -3'
miRNA:   3'- -CUUGGGCCACCCGGCGUCAAGUGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.