miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29112 5' -54 NC_006146.1 + 4724 0.66 0.95312
Target:  5'- uCAGAGAcgguguucCGCCAgUCCCUgaGUCUGCUa -3'
miRNA:   3'- -GUUUCUa-------GUGGUgGGGGA--CAGACGAa -5'
29112 5' -54 NC_006146.1 + 20435 0.67 0.923576
Target:  5'- cCAGGGGgccacugUCAuCCAgCCCCUGUCcgGCUUc -3'
miRNA:   3'- -GUUUCU-------AGU-GGUgGGGGACAGa-CGAA- -5'
29112 5' -54 NC_006146.1 + 30272 0.69 0.831334
Target:  5'- aGAGGGUCACCcUUCCCUaUCUGCa- -3'
miRNA:   3'- gUUUCUAGUGGuGGGGGAcAGACGaa -5'
29112 5' -54 NC_006146.1 + 37504 0.67 0.92959
Target:  5'- cCGAAGGUUAUagagACCCCCUGUCUu--- -3'
miRNA:   3'- -GUUUCUAGUGg---UGGGGGACAGAcgaa -5'
29112 5' -54 NC_006146.1 + 37952 0.66 0.957092
Target:  5'- cCAGAGAUaaucCACCACCCCCccccuccgcgggUGUUuuuuUGCg- -3'
miRNA:   3'- -GUUUCUA----GUGGUGGGGG------------ACAG----ACGaa -5'
29112 5' -54 NC_006146.1 + 42487 0.68 0.892437
Target:  5'- --cGGAUCACCcUCCCCUGgccguguUCUGCc- -3'
miRNA:   3'- guuUCUAGUGGuGGGGGAC-------AGACGaa -5'
29112 5' -54 NC_006146.1 + 62785 0.75 0.540806
Target:  5'- --uGGGUguCUGCCCCCUGUCUGUUUu -3'
miRNA:   3'- guuUCUAguGGUGGGGGACAGACGAA- -5'
29112 5' -54 NC_006146.1 + 63303 0.66 0.94445
Target:  5'- ------gUAUCugUCCCUGUCUGCUg -3'
miRNA:   3'- guuucuaGUGGugGGGGACAGACGAa -5'
29112 5' -54 NC_006146.1 + 68969 0.68 0.899816
Target:  5'- uCAucGGUCACCGCCCCCg--CgGCc- -3'
miRNA:   3'- -GUuuCUAGUGGUGGGGGacaGaCGaa -5'
29112 5' -54 NC_006146.1 + 85254 0.72 0.676209
Target:  5'- -cAGGGUCcccgugggccaACCAgCCCCUGUCUGCc- -3'
miRNA:   3'- guUUCUAG-----------UGGUgGGGGACAGACGaa -5'
29112 5' -54 NC_006146.1 + 90851 0.67 0.934794
Target:  5'- -cGAGAUCACgGCaCCgCUGUCUGg-- -3'
miRNA:   3'- guUUCUAGUGgUG-GGgGACAGACgaa -5'
29112 5' -54 NC_006146.1 + 96432 0.7 0.79565
Target:  5'- uUAAGGcuuGUguCCACCCCCUGUCcacUGCUc -3'
miRNA:   3'- -GUUUC---UAguGGUGGGGGACAG---ACGAa -5'
29112 5' -54 NC_006146.1 + 105192 0.67 0.923576
Target:  5'- -uGAGGUgACUACCCuCCUGUagguggaaaucagCUGCUUg -3'
miRNA:   3'- guUUCUAgUGGUGGG-GGACA-------------GACGAA- -5'
29112 5' -54 NC_006146.1 + 111455 0.66 0.957092
Target:  5'- uCGGGGAgUC-CUGCCCCCUGccCUGCg- -3'
miRNA:   3'- -GUUUCU-AGuGGUGGGGGACa-GACGaa -5'
29112 5' -54 NC_006146.1 + 116925 0.68 0.886183
Target:  5'- gGGGGAUCgcagACCACCCCCUGUg----- -3'
miRNA:   3'- gUUUCUAG----UGGUGGGGGACAgacgaa -5'
29112 5' -54 NC_006146.1 + 126698 0.7 0.813838
Target:  5'- -cAAGG-CACCGCCCCCgg-CUGCa- -3'
miRNA:   3'- guUUCUaGUGGUGGGGGacaGACGaa -5'
29112 5' -54 NC_006146.1 + 128346 0.74 0.58203
Target:  5'- gAAAGAauUCAgcgcccccCCACCCCCcGUCUGCUUc -3'
miRNA:   3'- gUUUCU--AGU--------GGUGGGGGaCAGACGAA- -5'
29112 5' -54 NC_006146.1 + 134043 1.05 0.007211
Target:  5'- aCAAAGAUCACCACCCCCUGUCUGCUUu -3'
miRNA:   3'- -GUUUCUAGUGGUGGGGGACAGACGAA- -5'
29112 5' -54 NC_006146.1 + 140571 0.66 0.95312
Target:  5'- gGAGGGcuucuccucUCAUCcuuuGCCCCCUGUUUGUUg -3'
miRNA:   3'- gUUUCU---------AGUGG----UGGGGGACAGACGAa -5'
29112 5' -54 NC_006146.1 + 141396 0.67 0.92959
Target:  5'- cCGAGGGUCACCuaaagucCCCCCUGgacggGCc- -3'
miRNA:   3'- -GUUUCUAGUGGu------GGGGGACaga--CGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.