miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29113 3' -60.3 NC_006146.1 + 170178 0.66 0.741119
Target:  5'- gCUGAGGGGGcucccgagggcgGGGCCgggGcCugGCgGGGg -3'
miRNA:   3'- gGAUUCUCCC------------CCCGGa--C-GugCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 48210 0.66 0.741119
Target:  5'- uCCgGGGAcuGGaGGGCCUgGCGCGCCuGGGu -3'
miRNA:   3'- -GGaUUCU--CCcCCCGGA-CGUGCGG-CUC- -5'
29113 3' -60.3 NC_006146.1 + 169247 0.66 0.741119
Target:  5'- gCUGAGGGGGcucccgagggcgGGGCCgggGcCugGCgGGGg -3'
miRNA:   3'- gGAUUCUCCC------------CCCGGa--C-GugCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 55701 0.66 0.741119
Target:  5'- gCCgccgccGGGGGGCuCUGCcCGCCGc- -3'
miRNA:   3'- -GGauucu-CCCCCCG-GACGuGCGGCuc -5'
29113 3' -60.3 NC_006146.1 + 168926 0.66 0.741119
Target:  5'- uUCUcGGAGacgaGGGGGCCcgugGaCAgGCCGAGu -3'
miRNA:   3'- -GGAuUCUC----CCCCCGGa---C-GUgCGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 161777 0.66 0.741119
Target:  5'- gCCUGGGc-GGGGGCCUGaaucuuCGCCu-- -3'
miRNA:   3'- -GGAUUCucCCCCCGGACgu----GCGGcuc -5'
29113 3' -60.3 NC_006146.1 + 167383 0.66 0.741119
Target:  5'- gCUGAGGGGGcucccgagggcgGGGCCgggGcCugGCgGGGg -3'
miRNA:   3'- gGAUUCUCCC------------CCCGGa--C-GugCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 60482 0.66 0.740183
Target:  5'- -gUGAGAggccGGGGGGCCaGCucccccgACGgCGAGg -3'
miRNA:   3'- ggAUUCU----CCCCCCGGaCG-------UGCgGCUC- -5'
29113 3' -60.3 NC_006146.1 + 78954 0.67 0.726034
Target:  5'- uCCUAAaAGGGGcaGGCCUGCcaguagaaagccaucACGUgGAGc -3'
miRNA:   3'- -GGAUUcUCCCC--CCGGACG---------------UGCGgCUC- -5'
29113 3' -60.3 NC_006146.1 + 136059 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 135409 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 135966 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 135873 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 136802 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 137453 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 136617 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 135780 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 136245 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 136431 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5'
29113 3' -60.3 NC_006146.1 + 136338 0.67 0.722231
Target:  5'- uCCggcGGGGGGuGGCCggGCcGCuGCCGGGu -3'
miRNA:   3'- -GGauuCUCCCC-CCGGa-CG-UG-CGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.