miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 3145 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 2213 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 1281 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 350 0.66 0.999992
Target:  5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3'
miRNA:   3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 15708 0.66 0.999992
Target:  5'- -----cGGGGCCacUGGccgaGGAGAGGGGGCu -3'
miRNA:   3'- auauauCCUUGG--AUC----UCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 47691 0.66 0.999992
Target:  5'- --gAUGGaGGACUUgggcguggaAGAGguGGGGAGCa -3'
miRNA:   3'- auaUAUC-CUUGGA---------UCUCuuUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 27 0.66 0.999992
Target:  5'- ----gAGGGGCCgGGAuGGAuguuGGGGGACu -3'
miRNA:   3'- auauaUCCUUGGaUCU-CUU----UCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 46538 0.66 0.999989
Target:  5'- gGUGUAGGGAagggggggugauuCCUGGAGGcgaucAGGGuGGCg -3'
miRNA:   3'- aUAUAUCCUU-------------GGAUCUCUu----UCCC-UUG- -5'
29114 3' -45.6 NC_006146.1 + 14196 0.66 0.999989
Target:  5'- -----cGGAGCCUGGAc--GGGGAGg -3'
miRNA:   3'- auauauCCUUGGAUCUcuuUCCCUUg -5'
29114 3' -45.6 NC_006146.1 + 51571 0.66 0.999989
Target:  5'- ---cUGGGcGCCgccgGGAGGggcccGGGGGAGCc -3'
miRNA:   3'- auauAUCCuUGGa---UCUCU-----UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 155446 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 152368 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 149290 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 146212 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 143134 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 158525 0.66 0.999985
Target:  5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3'
miRNA:   3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 157610 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 154532 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 151454 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 145298 0.66 0.999984
Target:  5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3'
miRNA:   3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.