Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29114 | 3' | -45.6 | NC_006146.1 | + | 15708 | 0.66 | 0.999992 |
Target: 5'- -----cGGGGCCacUGGccgaGGAGAGGGGGCu -3' miRNA: 3'- auauauCCUUGG--AUC----UCUUUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 350 | 0.66 | 0.999992 |
Target: 5'- ----cGGGAGC--AGAGGGAGGGcGGCg -3' miRNA: 3'- auauaUCCUUGgaUCUCUUUCCC-UUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 51571 | 0.66 | 0.999989 |
Target: 5'- ---cUGGGcGCCgccgGGAGGggcccGGGGGAGCc -3' miRNA: 3'- auauAUCCuUGGa---UCUCU-----UUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 14196 | 0.66 | 0.999989 |
Target: 5'- -----cGGAGCCUGGAc--GGGGAGg -3' miRNA: 3'- auauauCCUUGGAUCUcuuUCCCUUg -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 158525 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 155446 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 152368 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 149290 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 157610 | 0.66 | 0.999984 |
Target: 5'- ----gAGGAcGCCUGGAGGcggacccGAGGGGc- -3' miRNA: 3'- auauaUCCU-UGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 143134 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 146212 | 0.66 | 0.999985 |
Target: 5'- -cUGUAGcccguGACuCUGGAGGAcGGGGACg -3' miRNA: 3'- auAUAUCc----UUG-GAUCUCUUuCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 165746 | 0.67 | 0.999928 |
Target: 5'- ----cGGGggUC-AGGGAGGGGGAu- -3' miRNA: 3'- auauaUCCuuGGaUCUCUUUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 39570 | 0.67 | 0.999945 |
Target: 5'- ----cAGGAuCCUGGAGGgcaugaaGAGGGAc- -3' miRNA: 3'- auauaUCCUuGGAUCUCU-------UUCCCUug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 138429 | 0.67 | 0.999947 |
Target: 5'- aGUGgguGGAGCCUAGAGguAGGu--- -3' miRNA: 3'- aUAUau-CCUUGGAUCUCuuUCCcuug -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 30906 | 0.67 | 0.999905 |
Target: 5'- --gAUAGGAACCcacuUGGuGGcccagGGGGGAGCc -3' miRNA: 3'- auaUAUCCUUGG----AUCuCU-----UUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 60138 | 0.67 | 0.999905 |
Target: 5'- ----gAGGGACCUGGu---GGGGggUg -3' miRNA: 3'- auauaUCCUUGGAUCucuuUCCCuuG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 83764 | 0.67 | 0.999928 |
Target: 5'- --aGUGGGuGGCCUGGuGGGAGGucGCa -3' miRNA: 3'- auaUAUCC-UUGGAUCuCUUUCCcuUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 60770 | 0.67 | 0.999947 |
Target: 5'- ----cAGGAGCaaAGGGAAAaguGGGAGCc -3' miRNA: 3'- auauaUCCUUGgaUCUCUUU---CCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 128439 | 0.67 | 0.999947 |
Target: 5'- ----cGGGccgcaGACCgggcGGGAGGGGGAGCg -3' miRNA: 3'- auauaUCC-----UUGGau--CUCUUUCCCUUG- -5' |
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29114 | 3' | -45.6 | NC_006146.1 | + | 12700 | 0.67 | 0.999961 |
Target: 5'- ----cAGGAGCCUGGccauuGAcAAGGGggUc -3' miRNA: 3'- auauaUCCUUGGAUCu----CU-UUCCCuuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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