miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29114 3' -45.6 NC_006146.1 + 138683 1.08 0.031026
Target:  5'- gUAUAUAGGAACCUAGAGAAAGGGAACc -3'
miRNA:   3'- -AUAUAUCCUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 34853 0.92 0.249008
Target:  5'- gUAUAUAGaAACCUAGAGGAAGGGAACc -3'
miRNA:   3'- -AUAUAUCcUUGGAUCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 137234 0.79 0.853841
Target:  5'- --gGUGGGGGCCUGGGGucccGGGGACc -3'
miRNA:   3'- auaUAUCCUUGGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 137047 0.79 0.853841
Target:  5'- --gGUGGGGGCCUGGGGuuccGGGGACc -3'
miRNA:   3'- auaUAUCCUUGGAUCUCuuu-CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 162034 0.78 0.862218
Target:  5'- ---cUGGGAGCCUGGGGGc-GGGGGCa -3'
miRNA:   3'- auauAUCCUUGGAUCUCUuuCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 90066 0.75 0.951507
Target:  5'- ----aGGGAGCCUAgGAGGcggugcagGGGGGAGCa -3'
miRNA:   3'- auauaUCCUUGGAU-CUCU--------UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 23974 0.74 0.970404
Target:  5'- gGUGgGGGAGCC---GGAGAGGGGGCg -3'
miRNA:   3'- aUAUaUCCUUGGaucUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 7912 0.74 0.970404
Target:  5'- ----gAGGAgGCCgaGGAGAAGGGGGACc -3'
miRNA:   3'- auauaUCCU-UGGa-UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 170283 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 169352 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 167488 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 168420 0.74 0.973435
Target:  5'- ----gAGGGuguGCCUggcgGGGGAGAGGGGGCa -3'
miRNA:   3'- auauaUCCU---UGGA----UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 43646 0.73 0.981175
Target:  5'- --cGUGGccGCCUGGGGAGAGGGGc- -3'
miRNA:   3'- auaUAUCcuUGGAUCUCUUUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 8434 0.73 0.981175
Target:  5'- ---cUGGGGACCaGGAGAGcucGGGGGCg -3'
miRNA:   3'- auauAUCCUUGGaUCUCUUu--CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 115047 0.73 0.983336
Target:  5'- --aGUAGGAGgaggAGGGGAAGGGGGCg -3'
miRNA:   3'- auaUAUCCUUgga-UCUCUUUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 14848 0.73 0.988702
Target:  5'- -----cGGGGCCgcgGGAGGccGAGGGGGCa -3'
miRNA:   3'- auauauCCUUGGa--UCUCU--UUCCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 48939 0.72 0.990155
Target:  5'- gUGUcgGGGAccaGCCUcAGGGAGuuguGGGAGCg -3'
miRNA:   3'- -AUAuaUCCU---UGGA-UCUCUUu---CCCUUG- -5'
29114 3' -45.6 NC_006146.1 + 125949 0.72 0.990155
Target:  5'- -----cGGAGCCaGGAGAAGGGGucugGCg -3'
miRNA:   3'- auauauCCUUGGaUCUCUUUCCCu---UG- -5'
29114 3' -45.6 NC_006146.1 + 167609 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5'
29114 3' -45.6 NC_006146.1 + 168541 0.72 0.991333
Target:  5'- ---cUGGGGGCCUcgggggcGGAGggGGGGGu- -3'
miRNA:   3'- auauAUCCUUGGA-------UCUCuuUCCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.